Update installation of Parcels to be source installation #219
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- Define workspace with VirtualShip name and pixi-build preview - Configure multiple test environments (py310, py311, py312) - Set up feature environments for docs, typing, and pre-commit - Define pixi tasks for tests, docs, linting, and type checking - Align dependencies with existing pyproject.toml
- Replace mamba-org/setup-micromamba with prefix-dev/setup-pixi - Update test job to use pixi environments (test-py310, test-py312) - Update typechecking job to use pixi run typing - Enable pixi caching for faster CI runs - Simplify workflow by removing manual dependency installation
- Replace Conda-based development setup with Pixi - Add comprehensive Pixi workflows section with examples - Document testing, docs, and code quality commands - Include tips for environment management and CI reproduction - Update dependency management instructions to reference pixi.toml
Add Pixi badge to indicate project uses Pixi for environment management
Environment management is now handled by pixi.toml. The environment.yml file is no longer needed as all dependencies are defined in pixi.toml.
v4 of Parcels is 3.11+
for more information, see https://pre-commit.ci
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This PR updates the installation of Parcels in VirtualShip to be a source installation using Pixi as well as a git submodule. This git submodule approach means that you can edit Parcels alongside virtualship and easily push changes back to Parcels as well.
This is the resulting tree:
Making edits to Parcels via the submodule
cdinto Parcelsgit statusyou'll see the status of the Parcels repo. Make any edits you need, making branches and pushing to ParcelsParcelsor invirtualshipfolder)Once merged you can fetch the updated
v4-devbranch in the submoduleThis PR:
Note that a lot of the changes in here regarding Pixi (except the source installation part) are changes that we want to incorporate into
v1-devof parcels as its a significant improvement on previous dev workflow. These are in thepixibranch, or can be cherrypicked from here.