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Replace legacy validator with schema validator #337

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tientong98
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Closes #336.

Changes proposed in this pull request

  • replace legacy with schema validator
  • also change cubids print-metadata-fields to account for json file errors due to not been validated yet
  • add deno installation to to circleci

Documentation that should be reviewed

  • Installation page, replace old bids installation instruction with new ones (deno)

also change cubids print-metadata-fields to account for json file errors due to not been validated yet
command = ["bids-validator", path, "--verbose", "--json", "--ignoreSubjectConsistency"]
# New schema BIDS validator doesn't have option to ignore subject consistency.
# Build the deno command to run the BIDS validator.
command = ["deno", "run", "-A", "jsr:@bids/validator", path, "--verbose", "--json"]
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We might want some way to provide a given version of the validator or a version of the BIDS schema

gabridele added a commit to gabridele/CuBIDS_ that referenced this pull request Nov 25, 2024
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Replace legacy validator with schema bids in cubids validate
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