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Determine how best to divide 'minimal', 'resampling', and 'full' levels #350

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tsalo opened this issue Dec 2, 2023 · 1 comment
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enhancement New feature or request

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@tsalo
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tsalo commented Dec 2, 2023

Summary

#338 introduces the --level parameter, which matches fMRIPrep's new approach.

minimal:

  • transforms
  • aslref files
  • brain mask file
  • native-space CBF

resampling:

  • native-space preprocessed ASL
  • native-space CBF

full:

  • not native-space CBF, unless requested
  • standard-space outputs
  • atlases
  • parcellated outputs

What about confounds and CBF QC?
Also, CBF isn't a simple transform of ASL, so should I include that in minimal?
Finally, the ASL time series single-shot resampling is really computationally intensive, so maybe I should drop it from anything but full? Or maybe add a parameter that controls whether it's written out or not?

@tsalo tsalo added the enhancement New feature or request label Dec 2, 2023
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tsalo commented Dec 7, 2023

I think I need to write out aslref-space CBF maps when the workflow is set to minimal or resampling.

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