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Hello, when running ASLPREP, I get this error message. Please help me debug it. I have ASLPREP version: v0.6.0 and Freesurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1-f53a55a and I'm running ASLPREP using DOCKER.
Traceback (most recent call last):
File "/usr/local/miniconda/lib/python3.10/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
result["result"] = node.run(updatehash=updatehash)
File "/usr/local/miniconda/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 527, in run
result = self._run_interface(execute=True)
File "/usr/local/miniconda/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 645, in _run_interface
return self._run_command(execute)
File "/usr/local/miniconda/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 771, in _run_command
raise NodeExecutionError(msg)
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node _autorecon_surfs0.
Cmdline:
recon-all -autorecon-hemi lh -noparcstats -noparcstats2 -noparcstats3 -nohyporelabel -nobalabels -lh-only -openmp 8 -subjid sub-01 -sd /out/aslprep/sourcedata/freesurfer
Stdout:
ERROR: Flag -lh-only unrecognized.
-autorecon-hemi lh -noparcstats -noparcstats2 -noparcstats3 -nohyporelabel -nobalabels -lh-only -openmp 8 -subjid sub-01 -sd /out/aslprep/sourcedata/freesurfer
Linux 8559b23dfa2d 5.15.146.1-microsoft-standard-WSL2 #1 SMP Thu Jan 11 04:09:03 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s exited with ERRORS at Mon Apr 8 00:49:25 UTC 2024
Stderr:
Traceback:
RuntimeError: subprocess exited with code 1.
The text was updated successfully, but these errors were encountered:
Hello, when running ASLPREP, I get this error message. Please help me debug it. I have ASLPREP version: v0.6.0 and Freesurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1-f53a55a and I'm running ASLPREP using DOCKER.
The text was updated successfully, but these errors were encountered: