Dockerfile_AFNI

# Copied from: fMRIPrep Docker Container Image distribution
#
# MIT License
#
# Copyright (c) 2021 The NiPreps Developers
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
FROM ubuntu:18.04
ARG TAG_ANTS

# AFNI latest (neurodocker build)
RUN apt-get update -qq \
    && apt-get install -y -q --no-install-recommends \
           apt-utils \
           ed \
           gsl-bin \
           curl \
           libglib2.0-0 \
           libglu1-mesa-dev \
           libglw1-mesa \
           libgomp1 \
           libjpeg62 \
           libxm4 \
           netpbm \
           tcsh \
           xfonts-base \
           xvfb \
    && echo "Downloading AFNI ..." \
    && mkdir -p /opt/afni-latest \
    && curl -fsSL --retry 5 https://afni.nimh.nih.gov/pub/dist/tgz/linux_openmp_64.tgz \
    | tar -xz -C /opt/afni-latest --strip-components 1 \
    --exclude "linux_openmp_64/*.gz" \
    --exclude "linux_openmp_64/funstuff" \
    --exclude "linux_openmp_64/shiny" \
    --exclude "linux_openmp_64/afnipy" \
    --exclude "linux_openmp_64/lib/RetroTS" \
    --exclude "linux_openmp_64/meica.libs" \
    # Keep only what we use \
    && find /opt/afni-latest -type f -not \( \
        -name "3drefit" -or \
        -name "3dcalc" -or \
        -name "3dresample" -or \
        -name "3dFWHMx" -or \
        -name "3dAutobox" -or \
        -name "3dSkullStrip" -or \
        -name "3dAutomask" -or \
        -name "3dWarp" -or \
        -name "3dTcat" -or \
        -name "3dTstat" -or \
        -name "3dQwarp" -or \
        -name "3dSeg" -or \
        -name "3dZeropad" -or \
        -name "3dTsplit4D" -or \
        -name "3dvolreg" \) -delete