Dockerfile_DSIStudio

FROM nvidia/cuda:11.2.2-devel-ubuntu18.04
ARG TAG_ANTS
RUN apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64/3bf863cc.pub

RUN apt update && apt full-upgrade -y && \
  apt install --no-install-recommends -y software-properties-common && \
  add-apt-repository -y ppa:beineri/opt-qt-5.12.8-bionic && \
  add-apt-repository -y ppa:ubuntu-toolchain-r/test && \
  apt install -y --no-install-recommends \
  unzip \
  curl \
  wget \
  make \
  git \
  libboost-all-dev \
  zlib1g-dev \
  ca-certificates \
  qt512base \
  qt512charts-no-lgpl \
  mesa-common-dev \
  libglu1-mesa-dev \
  build-essential \
  ca-certificates \
  gnupg \
  bc \
  ninja-build \
  apt-transport-https \
  gcc-9 \
  g++-9 && \
  update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-9 60 --slave /usr/bin/g++ g++ /usr/bin/g++-9 && \
  apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

  RUN wget -O - https://apt.kitware.com/keys/kitware-archive-latest.asc 2>/dev/null \
  | apt-key add - \
&& apt-add-repository -y 'deb https://apt.kitware.com/ubuntu/ bionic main' \
&& apt-get update \
&& apt-get -y install cmake=3.23.2-0kitware1ubuntu18.04.1 cmake-data=3.23.2-0kitware1ubuntu18.04.1

#Need to use a different shell so the QT ENV script works
SHELL ["/bin/bash", "-c"]
ENV PATH="$PATH:/opt/qt512/bin"

ARG DSI_SHA=03476a67bc96a1d0c90928001b5dd1c490539ee0
ARG TIPL_SHA=ebd2d8b1ee13d6f87e78db62f2f1a1400b353898

RUN source /opt/qt512/bin/qt512-env.sh \
  && mkdir /opt/dsi-studio \
  && cd /opt/dsi-studio \
  && curl -sSLO https://github.com/frankyeh/DSI-Studio/archive/${DSI_SHA}.zip \
  && unzip ${DSI_SHA}.zip \
  && mv DSI-Studio-${DSI_SHA} src \
  && rm -rf ${DSI_SHA}.zip \
  && curl -sSLO https://github.com/frankyeh/TIPL/archive/${TIPL_SHA}.zip \
  && unzip ${TIPL_SHA}.zip \
  && mv TIPL-${TIPL_SHA} src/TIPL \
  && rm ${TIPL_SHA}.zip \
  && mkdir build && cd build \
  && qmake ../src && make -j 1

ARG ATLAS_SHA=bf5afab9b2405f076b1acdf4706c9688525eb713
ARG UNET_SHA=2e839aae744883983974194dcf6aeff154a82197

RUN cd /opt/dsi-studio \
  && mv build/dsi_studio . \
  && chmod 755 dsi_studio \
  && cp -R src/other/* . \
  && rm -rf src build \
  && curl -sSLO https://github.com/frankyeh/UNet-Studio-Data/archive/${UNET_SHA}.zip \
  && unzip ${UNET_SHA}.zip \
  && rm ${UNET_SHA}.zip \
  && mv UNet-Studio-Data-${UNET_SHA}/network/ . \
  && rm -rf mv UNet-Studio-Data-${UNET_SHA} \
  && curl -sSLO https://github.com/frankyeh/DSI-Studio-atlas/archive/${ATLAS_SHA}.zip \
  && unzip ${ATLAS_SHA}.zip \
  && rm -rf DSI-Studio-atlas-${ATLAS_SHA}/.git \
  && mv DSI-Studio-atlas-${ATLAS_SHA} atlas \
  && rm ${ATLAS_SHA}.zip