v0.5.7

TreeKnit v0.5.7

Diff since v0.5.6

Merged pull requests:

• fix default gamma value error in command line interface (#39) (@mmolari)
• Fix failing docs (#40) (@PierreBarrat)

v0.5.6

TreeKnit v0.5.6

Diff since v0.5.5

Merged pull requests:

• Fix error with CLI when specifying the gamma parameter value by reverting type of gamma parameter from Real to Float64 (#38) (@huddlej)

v0.5.5

TreeKnit v0.5.5

Diff since v0.5.4

v0.5.4

TreeKnit v0.5.4

Diff since v0.5.3

Merged pull requests:

• cli doctring should be more useful (#37) (@PierreBarrat)

v0.5.3

TreeKnit v0.5.3

Diff since v0.5.2

Merged pull requests:

• Fix ugly errors when input trees have missing branch length (#35) (@PierreBarrat)
• better cli docstring (#36) (@PierreBarrat)

v0.5.2

TreeKnit v0.5.2

Diff since v0.5.1

v0.5.1

TreeKnit v0.5.1

Diff since v0.5.0

v0.5.0

TreeKnit v0.5.0

Diff since v0.4.1

Merged pull requests:

• Mtk no consistency pierre edits (#32) (@PierreBarrat)
• Better logging (#33) (@PierreBarrat)
• check if dagger can be fixed (#34) (@anna-parker)

v0.4.1

TreeKnit v0.4.1

Diff since v0.4.0

Merged pull requests:

• Fix/new treetool prunegraft (#31) (@PierreBarrat)

v0.4.0

TreeKnit v0.4.0

Diff since v0.3.3

Closed issues:

• ERROR: LoadError: UndefVarError: map_splits_to_tree not defined (#21)

Merged pull requests:

• Add option to resolve polytomies only when the way to introduce splits is unique (#20) (@PierreBarrat)
• fix CLI to use resolve (not strict resolve) trees when converting to an ARG (#22) (@anna-parker)
• GitHub action to run tests and CLI test (#23) (@anna-parker)
• fix resolving/test.jl to adapt to TreeTools sorting polytomies (#26) (@PierreBarrat)
• Single map mccs function (#27) (@PierreBarrat)
• Standardize resolve function: Allow strict resolve to work on all trees (#28) (@anna-parker)