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Merged
btobers merged 3 commits into from
Mar 13, 2025
Merged

Release 1.0.2 #13

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006ba1e
notebooks updated for compatability with new ConfigManager class
btobers Feb 27, 2025
0e5275e
update root path so notebook will run in pygem tests
btobers Mar 2, 2025
a40ec8d
Notebooks updated for compatibility with new ConfigManager class
btobers Mar 3, 2025
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118 changes: 59 additions & 59 deletions advanced_test.ipynb
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339 changes: 115 additions & 224 deletions advanced_test_tw.ipynb
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12 changes: 6 additions & 6 deletions analyze_mcmc.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@
},
{
"cell_type": "code",
"execution_count": 1,
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
Expand All @@ -36,12 +36,12 @@
"from scipy.stats import norm, gamma, truncnorm, gaussian_kde\n",
"from scipy.stats import gaussian_kde\n",
"# pygem imports\n",
"import pygem.setup.config as config\n",
"# check for config\n",
"config.ensure_config()\n",
"from pygem.setup.config import ConfigManager\n",
"# instantiate ConfigManager\n",
"config_manager = ConfigManager()\n",
"# read the config\n",
"pygem_prms = config.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
" # the appropriate location. If any errors occur, check this first.\n",
"pygem_prms = config_manager.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
" # the appropriate location. If any errors occur, check this first.\n",
"# set some plotting defaults\n",
"plt.rcParams[\"font.family\"] = \"arial\"\n",
"plt.rcParams['font.size'] = 10\n",
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12 changes: 6 additions & 6 deletions analyze_mcmc_regional.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -53,7 +53,7 @@
},
{
"cell_type": "code",
"execution_count": 1,
"execution_count": null,
"id": "5d6d5f58",
"metadata": {},
"outputs": [],
Expand All @@ -68,12 +68,12 @@
"import xarray as xr\n",
"import matplotlib.image as mpimg\n",
"# pygem imports\n",
"import pygem.setup.config as config\n",
"# check for config\n",
"config.ensure_config()\n",
"from pygem.setup.config import ConfigManager\n",
"# instantiate ConfigManager\n",
"config_manager = ConfigManager()\n",
"# read the config\n",
"pygem_prms = config.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
" # the appropriate location. If any errors occur, check this first.\n",
"pygem_prms = config_manager.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
" # the appropriate location. If any errors occur, check this first.\n",
"import pygem.pygem_modelsetup as modelsetup\n",
"from pygem import mcmc\n",
"from pygem.shop import oib\n",
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12 changes: 6 additions & 6 deletions analyze_regional_change.ipynb
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Expand Up @@ -36,20 +36,20 @@
},
{
"cell_type": "code",
"execution_count": 1,
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"### imports ###\n",
"import os, sys, glob\n",
"# pygem imports\n",
"import pygem.pygem_modelsetup as modelsetup\n",
"import pygem.setup.config as config\n",
"# check for config\n",
"config.ensure_config()\n",
"from pygem.setup.config import ConfigManager\n",
"# instantiate ConfigManager\n",
"config_manager = ConfigManager()\n",
"# read the config\n",
"pygem_prms = config.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
" # the appropriate location. If any errors occur, check this first."
"pygem_prms = config_manager.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
" # the appropriate location. If any errors occur, check this first."
]
},
{
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10 changes: 5 additions & 5 deletions run_calibration.ipynb
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Expand Up @@ -40,12 +40,12 @@
"### imports ###\n",
"import os, sys, glob, json\n",
"# pygem imports\n",
"import pygem.setup.config as config\n",
"# check for config\n",
"config.ensure_config()\n",
"from pygem.setup.config import ConfigManager\n",
"# instantiate ConfigManager\n",
"config_manager = ConfigManager()\n",
"# read the config\n",
"pygem_prms = config.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
" # the appropriate location. If any errors occur, check this first.\n",
"pygem_prms = config_manager.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
" # the appropriate location. If any errors occur, check this first.\n",
"rootpath=pygem_prms['root']"
]
},
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11 changes: 5 additions & 6 deletions run_simulation.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -36,13 +36,12 @@
"### imports ###\n",
"import os, sys, glob, json\n",
"# pygem imports\n",
"import pygem.setup.config as config\n",
"\n",
"# check for config\n",
"config.ensure_config()\n",
"from pygem.setup.config import ConfigManager\n",
"# instantiate ConfigManager\n",
"config_manager = ConfigManager()\n",
"# read the config\n",
"pygem_prms = config.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
" # the appropriate location. If any errors occur, check this first.\n",
"pygem_prms = config_manager.read_config() # NOTE: ensure that your root path in ~/PyGEM/config.yaml points to\n",
" # the appropriate location. If any errors occur, check this first.\n",
"rootpath=pygem_prms['root']"
]
},
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