Add tutorial on how to estimate a Cox Proportional Hazards Model in glum #2883
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| name: CI | |
| on: | |
| # We would like to trigger for CI for any pull request action - | |
| # both from QuantCo's branches as well as forks. | |
| pull_request: | |
| # In addition to pull requests, we want to run CI for pushes | |
| # to the main branch and tags. | |
| push: | |
| branches: | |
| - "main" | |
| tags: | |
| - "*" | |
| jobs: | |
| pre-commit-checks: | |
| name: Linux - pre-commit checks | |
| timeout-minutes: 30 | |
| runs-on: ubuntu-latest | |
| env: | |
| PRE_COMMIT_USE_MICROMAMBA: 1 | |
| steps: | |
| - name: Checkout branch | |
| uses: actions/checkout@v4 | |
| - name: Set up pixi | |
| uses: prefix-dev/[email protected] | |
| with: | |
| environments: lint default | |
| - name: pre-commit | |
| run: pixi run -e lint pre-commit-run --color=always --show-diff-on-failure | |
| unit-tests: | |
| name: Tests | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| CI: True | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| include: | |
| - { os: ubuntu-latest, environment: 'py310' } | |
| - { os: ubuntu-latest, environment: 'py311' } | |
| - { os: ubuntu-latest, environment: 'py312' } | |
| - { os: windows-latest, environment: 'py312' } | |
| - { os: macos-latest, environment: 'py312' } | |
| - { os: ubuntu-latest, environment: 'oldies' } | |
| - { os: ubuntu-latest, environment: 'nightly' } | |
| steps: | |
| - name: Checkout branch | |
| uses: actions/checkout@v4 | |
| - name: Set up pixi | |
| uses: prefix-dev/setup-pixi@992a3081e2f87829e0fff9fb29f4fe6a5d1e80a2 | |
| with: | |
| environments: ${{ matrix.environment }} | |
| - name: Install nightlies | |
| if: matrix.environment == 'nightly' | |
| run: pixi run -e ${{ matrix.environment }} install-nightlies | |
| - name: Install repository | |
| run: pixi run -e ${{ matrix.environment }} postinstall | |
| - name: Run pytest | |
| run: pixi run -e ${{ matrix.environment }} test -nauto | |
| - name: Run doctest | |
| # Check that the readme example will work by running via doctest. | |
| # We run outside the repo to make the test a bit more similar to | |
| # a user running after installing with conda. | |
| run: | | |
| mkdir ../temp | |
| cp README.md ../temp | |
| cd ../temp | |
| pixi run --manifest-path ../glum/pixi.toml -e ${{ matrix.environment }} python -m doctest -v README.md |