✨ test Snakemake workflow with more recent Python versions #5
Workflow file for this run
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| name: Test that tutorial runs on latest colab image | |
| on: | |
| push: | |
| branches: [dev] | |
| pull_request: | |
| branches: [main, dev] | |
| schedule: | |
| - cron: '0 2 3 * *' | |
| jobs: | |
| test-tutorial-on-colab: | |
| name: Test tutorial on latest colab image | |
| runs-on: ubuntu-latest-4core # increase disk space | |
| # https://console.cloud.google.com/artifacts/docker/colab-images/europe/public/runtime | |
| container: | |
| image: europe-docker.pkg.dev/colab-images/public/runtime:latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install pimms-learn and papermill | |
| run: | | |
| python3 -m pip install pimms-learn papermill | |
| - name: Run tutorial | |
| run: | | |
| cd project | |
| papermill 04_1_train_pimms_models.ipynb 04_1_train_pimms_models_output.ipynb |