📝 add version

for base workflow configuration (Snakefile vs Snakefile_v2)
RasmussenLab · Nov 1, 2023 · 500220d · 500220d
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commit 500220d
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diff --git a/project/config/across_datasets/config.yaml b/project/config/across_datasets/config.yaml
@@ -1,3 +1,4 @@
+# # config for Snakefile_best_across_datasets
 epochs_max:
 - 100
 batch_size: 64

diff --git a/project/config/appl_ald_data/plasma/proteinGroups/config.yaml b/project/config/appl_ald_data/plasma/proteinGroups/config.yaml
@@ -1,3 +1,4 @@
+# config for Snakefile_v1
 config_split: config/appl_ald_data/plasma/proteinGroups/split.yaml
 config_train: config/appl_ald_data/plasma/proteinGroups/train_{model}.yaml
 folder_experiment: runs/appl_ald_data/plasma/proteinGroups

diff --git a/project/config/knn_comparison/ald_pgs_all/config.yaml b/project/config/knn_comparison/ald_pgs_all/config.yaml
@@ -1,3 +1,4 @@
+# config for Snakefile_v2
 config_train: runs/knn_comparison/ald_pgs_all/configs_train/train_{model}.yaml
 folder_experiment: runs/knn_comparison/ald_pgs_all
 fn_rawfile_metadata: data/ALD_study/processed/raw_meta.csv

diff --git a/project/config/knn_comparison/hela_pgs_large/config.yaml b/project/config/knn_comparison/hela_pgs_large/config.yaml
@@ -1,3 +1,4 @@
+# config for Snakefile_v2
 config_split: config/knn_comparison/hela_pgs_large/split.yaml
 config_train: runs/knn_comparison/hela_pgs_large/configs_train/train_{model}.yaml
 folder_experiment: runs/knn_comparison/hela_pgs_large

diff --git a/project/config/single_dev_dataset/evidence_N50/config.yaml b/project/config/single_dev_dataset/evidence_N50/config.yaml
@@ -1,3 +1,4 @@
+# config for Snakefile_v1
 config_split: config/single_dev_dataset/evidence_N50/split.yaml
 config_train: config/single_dev_dataset/evidence_N50/train_{model}.yaml
 folder_experiment: runs/dev_dataset_small/evidence_N50

diff --git a/project/config/single_dev_dataset/example/config.yaml b/project/config/single_dev_dataset/example/config.yaml
@@ -1,3 +1,4 @@
+# config for Snakefile_v1
 config_split: config/single_dev_dataset/example/split.yaml
 config_train: config/single_dev_dataset/example/train_{model}.yaml
 folder_experiment: runs/example

diff --git a/project/config/single_dev_dataset/peptides_N50/config.yaml b/project/config/single_dev_dataset/peptides_N50/config.yaml
@@ -1,3 +1,4 @@
+# config for Snakefile_v1
 config_split: config/single_dev_dataset/peptides_N50/split.yaml
 config_train: config/single_dev_dataset/peptides_N50/train_{model}.yaml
 folder_experiment: runs/dev_dataset_small/peptides_N50

diff --git a/project/config/single_dev_dataset/proteinGroups_N50/config.yaml b/project/config/single_dev_dataset/proteinGroups_N50/config.yaml
@@ -1,3 +1,4 @@
+# config for Snakefile_v1
 config_split: config/single_dev_dataset/proteinGroups_N50/split.yaml
 config_train: config/single_dev_dataset/proteinGroups_N50/train_{model}.yaml
 folder_experiment: runs/dev_dataset_small/proteinGroups_N50