🐛👷 try large mac-os image, env file

- change environment channel list and cuda dependencies - unify environment file again
RasmussenLab · Aug 16, 2023 · 64f5643 · 64f5643
1 parent 75380a3
commit 64f5643
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Showing 4 changed files with 10 additions and 140 deletions.
diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
@@ -13,7 +13,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: ["ubuntu-latest", "macos-13", "windows-latest"]
+        os: ["ubuntu-latest", "macos-13-xl", "windows-latest"]
         python-version: ["3.8"]
     steps:
     - name: Checkout

diff --git a/environment.yml b/environment.yml
@@ -1,12 +1,13 @@
 # Dev Environment
 name: vaep
 channels:
-  # - defaults
-  - conda-forge
   - pytorch
-  - fastai
+  - nvidia
+  - fastai # fastchan
   - bioconda
   - plotly
+  - defaults
+  - conda-forge
 dependencies:
   - python=3.8
   - numpy
@@ -19,12 +20,13 @@ dependencies:
   - seaborn
   - pip
   # ML
-  - pytorch=1
+  - pytorch=1 #=1.13.1=py3.8_cuda11.7_cudnn8_0
+  - pytorch-cuda
   - scikit-learn
   - fastai
-  - torchvision
-  - cudatoolkit
-  - tensorboard
+  # - torchvision
+  # - cudatoolkit
+  # - tensorboard
   - umap-learn
   # stats
   - pingouin

diff --git a/environment_m1.yml b/environment_m1.yml
diff --git a/environment_win.yml b/environment_win.yml