Merge pull request #56 from RasmussenLab/cicd_update

Cicd update

.github/workflows/ci.yaml

@@ -41,7 +41,9 @@ jobs:
       run: |
         conda info
         conda list
-        conda info -e
+        conda env export --from-history --no-builds > environment.yml
+        conda env export --no-builds
+        conda env export --no-builds > environment_w_versions.yml
     - name: test-r-kernel-imports
       run: |
         Rscript -e "library(stringi)"
@@ -78,6 +80,15 @@ jobs:
         cd project
         snakemake -p -c1 -n --configfile config/single_dev_dataset/example/config.yaml
         snakemake -p -c4 -k --configfile config/single_dev_dataset/example/config.yaml
+    - name: Archive results
+    # https://github.com/actions/upload-artifact
+      uses: actions/upload-artifact@v3
+      with:
+        name: example-workflow-results-${{ matrix.os }}
+        path: |
+          project/runs/example/
+          environment.yml
+          environment_w_versions.yml
 
   run-unit-local-pip-installation:
     runs-on: ${{ matrix.os }}