In unitttests, error on warnings

RasmussenLab · Nov 7, 2023 · 71dc2fa · 71dc2fa
1 parent 2d028ad
commit 71dc2fa
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/.github/workflows/unittest.yml b/.github/workflows/unittest.yml
@@ -39,4 +39,4 @@ jobs:
         # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Run tests
-      run: python -m pytest test
+      run: python -m pytest test -We
diff --git a/test/test_results.py b/test/test_results.py
@@ -30,8 +30,9 @@ def setUp(self):
         self.io.seek(0)
 
     def test_runs(self):
-        comp = vamb.parsecontigs.Composition.from_file(self.io)
-        self.assertIsInstance(comp, vamb.parsecontigs.Composition)
+        with self.assertRaises(UserWarning):
+            comp = vamb.parsecontigs.Composition.from_file(self.io)
+            self.assertIsInstance(comp, vamb.parsecontigs.Composition)
 
     if TEST_UNSTABLE_HASHES:
 

diff --git a/vamb/parsecontigs.py b/vamb/parsecontigs.py
@@ -11,7 +11,6 @@
 from collections.abc import Iterable, Sequence
 from typing import IO, Union, TypeVar, Optional
 from pathlib import Path
-import warnings
 
 # This kernel is created in src/create_kernel.py. See that file for explanation
 _KERNEL: _np.ndarray = _vambtools.read_npz(