fix: folders in CI

RasmussenLab · Oct 26, 2023 · baa4990 · baa4990
1 parent 8de0b73
commit baa4990
Showing 1 changed file with 6 additions and 6 deletions.
diff --git a/.github/workflows/cli_vamb.yml b/.github/workflows/cli_vamb.yml
@@ -43,14 +43,14 @@ jobs:
     - name: Run TaxVAMB
       run: |
         vamb bin taxvamb --outdir outdir_taxvamb --fasta catalogue_mock.fna.gz --rpkm abundance_mock.npz --taxonomy taxonomy_mock.tsv -pe 10 -pt 10 -e 10 -q -t 10 -o C --minfasta 200000
-        ls -la outdir_vamb
-        cat outdir_vamb/log.txt
+        ls -la outdir_taxvamb
+        cat outdir_taxvamb/log.txt
         vamb bin taxvamb --outdir outdir_taxvamb_no_predict --no_predictor --fasta catalogue_mock.fna.gz --rpkm abundance_mock.npz --taxonomy taxonomy_mock.tsv -e 10 -q -t 10 -o C --minfasta 200000
-        ls -la outdir_vamb_no_predict
-        cat outdir_vamb_no_predict/log.txt
+        ls -la outdir_taxvamb_no_predict
+        cat outdir_taxvamb_no_predict/log.txt
         vamb bin taxvamb --outdir outdir_taxvamb_preds --fasta catalogue_mock.fna.gz --rpkm abundance_mock.npz --taxonomy_predictions outdir_taxvamb/results_taxonomy_predictor.csv -e 10 -q -t 10 -o C --minfasta 200000
-        ls -la outdir_vamb_preds
-        cat outdir_vamb_preds/log.txt
+        ls -la outdir_taxvamb_preds
+        cat outdir_taxvamb_preds/log.txt
     - name: Run Taxometer
       run: |
         vamb taxometer --outdir outdir_taxometer --fasta catalogue_mock.fna.gz --rpkm abundance_mock.npz --taxonomy taxonomy_mock.tsv -pe 10 -pt 10