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TaxVAMB #204

Merged
merged 25 commits into from
Nov 6, 2023
Merged

TaxVAMB #204

merged 25 commits into from
Nov 6, 2023

Commits on Oct 26, 2023

  1. feat: all VAEVAE in one commit

    @sgalkina
    sgalkina committed Oct 26, 2023
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  2. fix: cluster arguments

    @sgalkina
    sgalkina committed Oct 26, 2023
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  3. fix: remove taxonomy indices

    @sgalkina
    sgalkina committed Oct 26, 2023
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  4. refactor: feature loading functions

    @sgalkina
    sgalkina committed Oct 26, 2023
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  5. feat: add absolute abundance

    @sgalkina
    svekut authored and sgalkina committed Oct 26, 2023
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  6. test: VAEVAE

    @sgalkina
    sgalkina committed Oct 26, 2023
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  7. chore: runs

    @sgalkina
    sgalkina committed Oct 26, 2023
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  8. chore: lint and tests

    @sgalkina
    sgalkina committed Oct 26, 2023
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  9. test: snakemake

    @sgalkina
    sgalkina committed Oct 26, 2023
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  10. test: snakemake

    @sgalkina
    sgalkina committed Oct 26, 2023
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  11. feat: interface with subcommands

    @sgalkina
    sgalkina committed Oct 26, 2023
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  12. fix: test

    @sgalkina
    sgalkina committed Oct 26, 2023
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  13. chore: lint

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    sgalkina committed Oct 26, 2023
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  14. feat: interface docs

    @sgalkina
    sgalkina committed Oct 26, 2023
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  15. chore: remove AAE and lint

    @sgalkina
    sgalkina committed Oct 26, 2023
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  16. fix: null byte

    @sgalkina
    sgalkina committed Oct 26, 2023
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  17. chore: order in docs

    @sgalkina
    sgalkina committed Oct 26, 2023
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  18. feat: CLI TaxVAMB

    @sgalkina
    sgalkina committed Oct 26, 2023
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  19. fix: CLI pipelines

    @sgalkina
    sgalkina committed Oct 26, 2023
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  20. fix: folders in CI

    @sgalkina
    sgalkina committed Oct 26, 2023
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  21. fix: marker genes

    @sgalkina
    sgalkina committed Oct 26, 2023
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  22. fix: reclustering contig ids with separators

    @sgalkina
    sgalkina committed Oct 26, 2023
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  23. chore: lint

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    sgalkina committed Oct 26, 2023
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  24. chore: README

    @sgalkina
    sgalkina committed Oct 26, 2023
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Commits on Oct 30, 2023

  1. chore: change basic to default

    @sgalkina
    sgalkina committed Oct 30, 2023
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