added freesurfer 7.4.1 #207
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| name: CI | |
| on: | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| run-tests: | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| python-version: ['3.11', '3.10', '3.9', '3.8'] | |
| steps: | |
| - name: Install Apptainer | |
| env: | |
| VERSION: 1.1.5 | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y wget | |
| wget https://github.com/apptainer/apptainer/releases/download/v${VERSION}/apptainer_${VERSION}_amd64.deb | |
| wget https://github.com/apptainer/apptainer/releases/download/v${VERSION}/apptainer-suid_${VERSION}_amd64.deb | |
| sudo apt-get install --yes ./apptainer* | |
| - name: Set Apptainer/Singularity environment variables | |
| run: | | |
| # Give reproenv the full path to apptainer, so it still works with `sudo`. | |
| echo REPROENV_APPTAINER_PROGRAM=apptainer >> $GITHUB_ENV | |
| echo APPTAINER_CACHEDIR=/dev/shm/$(whoami)/singularity >> $GITHUB_ENV | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install neurodocker | |
| run: python -m pip install --editable .[dev] | |
| - name: Check types | |
| run: mypy --install-types --non-interactive neurodocker | |
| - name: Check style | |
| run: flake8 neurodocker | |
| - name: Check black formatting | |
| run: black --check neurodocker | |
| - name: Run python tests | |
| run: pytest --numprocesses auto | |
| - name: Get code coverage | |
| run: codecov |