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Dev. Meta alignment addition #337

Merged
merged 25 commits into from
Oct 20, 2024
Merged

Dev. Meta alignment addition #337

merged 25 commits into from
Oct 20, 2024

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RichieHakim
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  • New image alignment methods (RoMa, Disk_lightglue)
  • New framework for alignment
  • Match search algorithm for geometric alignment
  • New plotting for alignment
  • Moved data_test.zip to local folder
  • little bug fixes for divide by zero and other things

RichieHakim and others added 25 commits October 10, 2024 14:06
@RichieHakim
INITIAL COMMIT
535fcb1
@RichieHakim
Wrote new meta registration method for geometric
e1d14d9
@dependabot
chore(deps): bump hdbscan from 0.8.38.post1 to 0.8.39
c209295 
Bumps [hdbscan](https://github.com/scikit-learn-contrib/hdbscan) from 0.8.38.post1 to 0.8.39.
- [Release notes](https://github.com/scikit-learn-contrib/hdbscan/releases)
- [Commits](scikit-learn-contrib/hdbscan@release-0.8.38-1...release-0.8.39)

---
updated-dependencies:
- dependency-name: hdbscan
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot
chore(deps): bump pillow from 10.4.0 to 11.0.0
511cadd 
Bumps [pillow](https://github.com/python-pillow/Pillow) from 10.4.0 to 11.0.0.
- [Release notes](https://github.com/python-pillow/Pillow/releases)
- [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst)
- [Commits](python-pillow/Pillow@10.4.0...11.0.0)

---
updated-dependencies:
- dependency-name: pillow
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
@RichieHakim
Merge pull request #331 from RichieHakim/dependabot/pip/dev/pillow-11…
97bb634 
….0.0

chore(deps): bump pillow from 10.4.0 to 11.0.0
@RichieHakim
Merge pull request #330 from RichieHakim/dependabot/pip/dev/hdbscan-0…
65e31ba 
….8.39

chore(deps): bump hdbscan from 0.8.38.post1 to 0.8.39
@RichieHakim
bug fixes to get new alignment methods working
d31759e
@dependabot
chore(deps): bump torchvision from 0.19.1 to 0.20.0
75797c1 
Bumps [torchvision](https://github.com/pytorch/vision) from 0.19.1 to 0.20.0.
- [Release notes](https://github.com/pytorch/vision/releases)
- [Commits](pytorch/vision@v0.19.1...v0.20.0)

---
updated-dependencies:
- dependency-name: torchvision
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot
chore(deps): bump torchaudio from 2.4.1 to 2.5.0
7798f08 
Bumps [torchaudio](https://github.com/pytorch/audio) from 2.4.1 to 2.5.0.
- [Release notes](https://github.com/pytorch/audio/releases)
- [Commits](pytorch/audio@v2.4.1...v2.5.0)

---
updated-dependencies:
- dependency-name: torchaudio
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot
chore(deps): bump torch from 2.4.1 to 2.5.0
0c9a55c 
Bumps [torch](https://github.com/pytorch/pytorch) from 2.4.1 to 2.5.0.
- [Release notes](https://github.com/pytorch/pytorch/releases)
- [Changelog](https://github.com/pytorch/pytorch/blob/main/RELEASE.md)
- [Commits](pytorch/pytorch@v2.4.1...v2.5.0)

---
updated-dependencies:
- dependency-name: torch
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
@RichieHakim
Merge pull request #334 from RichieHakim/dependabot/pip/dev/torch-2.5.0
249f625 
chore(deps): bump torch from 2.4.1 to 2.5.0
@RichieHakim
Merge pull request #333 from RichieHakim/dependabot/pip/dev/torchaudi…
e29b0ea 
…o-2.5.0

chore(deps): bump torchaudio from 2.4.1 to 2.5.0
@RichieHakim
Merge branch 'dev' into dependabot/pip/dev/torchvision-0.20.0
70ed17a
@RichieHakim
Merge pull request #332 from RichieHakim/dependabot/pip/dev/torchvisi…
e2ea94b 
…on-0.20.0

chore(deps): bump torchvision from 0.19.1 to 0.20.0
@dependabot
chore(deps): bump psutil from 6.0.0 to 6.1.0
204eea6 
Bumps [psutil](https://github.com/giampaolo/psutil) from 6.0.0 to 6.1.0.
- [Changelog](https://github.com/giampaolo/psutil/blob/master/HISTORY.rst)
- [Commits](giampaolo/psutil@release-6.0.0...release-6.1.0)

---
updated-dependencies:
- dependency-name: psutil
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
@RichieHakim
Merge pull request #335 from RichieHakim/dependabot/pip/dev/psutil-6.1.0
b81de22 
chore(deps): bump psutil from 6.0.0 to 6.1.0
@RichieHakim
improve match search algorithm and fix some bugs with new alignment m…
a7ad348 
…ethod
@RichieHakim
move testing to local folder
7c336e9
@RichieHakim
note on readme
e293985
@RichieHakim
move set_random_seed and some checks
addb7e9
@RichieHakim
divide by zero handling
8a14a1d
@RichieHakim
edge case harini
a457aed
@RichieHakim
update notebook with _david version
340837c
@RichieHakim
set default geo method to roma
a15231b
@RichieHakim
Merge pull request #336 from RichieHakim/meta_image_alignment
859091b 
Meta image alignment
@RichieHakim RichieHakim merged commit 1953f69 into main Oct 20, 2024
48 checks passed
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@RichieHakim