Added description to prepareExtractionCoordinates_ function, need review

[shubham1637]

I added some description to the prepareExtractionCoordinates_ function. I am not sure about the transition_exp_used size.

[hroest]

I think this should go into the header

[hroest]

I suggest to actually annotate functions in the header since this then also shows up in the documentation, also we already have some documentation there so you may want to merely enhance it:

OpenMS/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathWorkflow.h

Lines 316 to 337 in c648c46

	/** @brief Function to prepare extraction coordinates that also correctly handles RT transformations
	*
	* Creates a set of (empty) chromatograms and extraction coordinates with
	* the correct ids, m/z and retention time start/end points to be extracted
	* by the ChromatogramExtractor.
	*
	* Handles rt extraction windows by calculating the correct transformation
	* for each coordinate.
	*
	* @param chrom_list Output of chromatograms (will be filled with empty chromatogram ptrs)
	* @param coordinates Output of extraction coordinates (will be filled with matching extraction coordinates)
	* @param transition_exp_used The transition experiment used to create the coordinates
	* @param ms1 Whether to perform MS1 (precursor ion) or MS2 (fragment ion) extraction
	* @param trafo_inverse Inverse transformation function
	* @param cp Parameter set for the chromatogram extraction
	*
	*/
	void prepareExtractionCoordinates_(std::vector< OpenSwath::ChromatogramPtr > & chrom_list,
	std::vector< ChromatogramExtractorAlgorithm::ExtractionCoordinates > & coordinates,
	const OpenSwath::LightTargetedExperiment & transition_exp_used,
	const bool ms1, const TransformationDescription trafo_inverse,
	const ChromExtractParams & cp) const;

[hroest]

probably we dont want to write explicit numbers in here as 300 seconds is just an example value, not a fixed value