add pep, qvalue and p value as valid columns

Roestlab · Apr 2, 2024 · 3d21131 · 3d21131
1 parent a01d399
commit 3d21131
Showing 1 changed file with 6 additions and 6 deletions.
diff --git a/massdash/loaders/access/OSWDataAccess.py b/massdash/loaders/access/OSWDataAccess.py
@@ -680,17 +680,17 @@ def _initializeValidScores(self):
         print("Initializing valid scores for selection")
         validScores = {}
         if check_sqlite_table(self.conn, "SCORE_MS2"):
-            validScores['SCORE_MS2'] = ["SCORE"]
+            validScores['SCORE_MS2'] = ["SCORE", "PVALUE", "PEP", "QVALUE"]
         if check_sqlite_table(self.conn, "SCORE_MS1"):
-            validScores['SCORE_MS1'] = ["SCORE"]
+            validScores['SCORE_MS1'] = ["SCORE", "PVALUE", "PEP", "QVALUE"]
         if check_sqlite_table(self.conn, "SCORE_TRANSITION"):
-            validScores['SCORE_TRANSITION'] = ["SCORE"]
+            validScores['SCORE_TRANSITION'] = ["SCORE", "PVALUE", "PEP", "QVALUE"]
         if check_sqlite_table(self.conn, "SCORE_PEPTIDE"):
-            validScores['SCORE_PEPTIDE'] = ["SCORE"]
+            validScores['SCORE_PEPTIDE'] = ["SCORE", "PVALUE", "PEP", "QVALUE"]
         if check_sqlite_table(self.conn, "SCORE_PROTEIN"):
-            validScores['SCORE_PROTEIN'] = ["SCORE"]
+            validScores['SCORE_PROTEIN'] = ["SCORE", "PVALUE", "PEP", "QVALUE"]
         if check_sqlite_table(self.conn, "SCORE_IPF"):
-            validScores['SCORE_IPF'] = ["SCORE"]
+            validScores['SCORE_IPF'] = ["SCORE", "PVALUE", "PEP", "QVALUE"]
         if check_sqlite_table(self.conn, "FEATURE_MS2"):
             validScores['FEATURE_MS2'] = []
             stmt = "select * from FEATURE_MS2"