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# /home/data/knetminer/etl-test/plants-lite/58/generic/knowledge-network-free.oxl | ||
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# Unfortunately, there isn't consistence, so we can use KETL_DATASET_ID here | ||
oxl_home="$KNET_HOME/etl-test/plants-lite/$KETL_DATASET_VERSION" | ||
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export KETL_SRC_OXL="$oxl_home/generic/knowledge-network.oxl" | ||
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export KETL_OUT="$KETL_OUT_HOME/$KETL_DATASET_ID/$KETL_DATASET_VERSION" | ||
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## Neo | ||
# | ||
export KETL_HAS_NEO4J=true | ||
export KETL_NEO_VERSION='5.20.0' | ||
export NEO4J_HOME="$KNET_SOFTWARE/neo4j-community-$KETL_NEO_VERSION-etl" | ||
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## Knet Initialiser | ||
# | ||
# The name within the code base, which identifies the config dir to be | ||
# used for the KnetMiner initialiser | ||
export KNET_INIT_DATASET_ID="plants-lite" | ||
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##### Values for server-sync.sh | ||
# | ||
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## RRes Neo server | ||
#export [email protected] | ||
#export KNET_NEO_DATA=/opt/data | ||
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## RRes Test instances for Knetminer | ||
# | ||
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# Test servers like babvs73 | ||
#export KNET_TESTINST_DATA_PATH=/opt/data/knetminer-datasets/plants-lite-ci | ||
# babvs73: based on old Traverser, available at knetminer.com/ci-test | ||
# babvs72: based on Neo4j+OXL Traverser, available at knetminer.com/ci-test-cypher | ||
#export KNET_TESTINST_SSH="[email protected] [email protected]" |
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rres-endpoints/config/datasets/plants-lite-58-metadata-descriptor.properties
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# These files are passed to the Ondex Metadata descriptor tool. | ||
# https://github.com/Rothamsted/knetbuilder/tree/master/ondex-knet-builder/modules/rdf-export-2 | ||
# | ||
datasetId = plants-lite | ||
datasetAccession = KnetMiner:Plants-Lite | ||
datasetTitle = Knetminer's knowledge graph about plants | ||
datasetDescription = \ | ||
Knetminer is a gene discovery platform, which allows for exploring knwoledge graphs computed \ | ||
from common plant biology data, such as ENSEMBL, UniProt, TAIR, PUBMED and more.\n\ | ||
The plants lite dataset contains information about the several gramineae species, which is also linked \ | ||
to embedded data about the Arabidopsis model organism.\n\ | ||
This is the free edition, which includes Arabidopsis, rice, wheat, camelina and rapeseed. | ||
datasetVersion = 58 | ||
# TODO: better URLs | ||
datasetURL = https://knetminer.com/about | ||
datasetNeo4jBrowserURL = <https://neo-dev.knetminer.com:7473> | ||
datasetNeo4jBOLTURL = <bolt://neo-dev.knetminer.com:7687> |