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Added plants lite bundle configs
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holegar committed Sep 5, 2024
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38 changes: 38 additions & 0 deletions rres-endpoints/config/datasets/plants-lite-58-cfg.sh
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# /home/data/knetminer/etl-test/plants-lite/58/generic/knowledge-network-free.oxl

# Unfortunately, there isn't consistence, so we can use KETL_DATASET_ID here
oxl_home="$KNET_HOME/etl-test/plants-lite/$KETL_DATASET_VERSION"

export KETL_SRC_OXL="$oxl_home/generic/knowledge-network.oxl"

export KETL_OUT="$KETL_OUT_HOME/$KETL_DATASET_ID/$KETL_DATASET_VERSION"

## Neo 
#
export KETL_HAS_NEO4J=true
export KETL_NEO_VERSION='5.20.0'
export NEO4J_HOME="$KNET_SOFTWARE/neo4j-community-$KETL_NEO_VERSION-etl"

## Knet Initialiser
#
# The name within the code base, which identifies the config dir to be
# used for the KnetMiner initialiser
export KNET_INIT_DATASET_ID="plants-lite"


##### Values for server-sync.sh
#

## RRes Neo server
#export [email protected]
#export KNET_NEO_DATA=/opt/data


## RRes Test instances for Knetminer
#

# Test servers like babvs73
#export KNET_TESTINST_DATA_PATH=/opt/data/knetminer-datasets/plants-lite-ci
# babvs73: based on old Traverser, available at knetminer.com/ci-test
# babvs72: based on Neo4j+OXL Traverser, available at knetminer.com/ci-test-cypher
#export KNET_TESTINST_SSH="[email protected] [email protected]"
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# These files are passed to the Ondex Metadata descriptor tool.
# https://github.com/Rothamsted/knetbuilder/tree/master/ondex-knet-builder/modules/rdf-export-2
#
datasetId = plants-lite
datasetAccession = KnetMiner:Plants-Lite
datasetTitle = Knetminer's knowledge graph about plants
datasetDescription = \
Knetminer is a gene discovery platform, which allows for exploring knwoledge graphs computed \
from common plant biology data, such as ENSEMBL, UniProt, TAIR, PUBMED and more.\n\
The plants lite dataset contains information about the several gramineae species, which is also linked \
to embedded data about the Arabidopsis model organism.\n\
This is the free edition, which includes Arabidopsis, rice, wheat, camelina and rapeseed.
datasetVersion = 58
# TODO: better URLs
datasetURL = https://knetminer.com/about
datasetNeo4jBrowserURL = <https://neo-dev.knetminer.com:7473>
datasetNeo4jBOLTURL = <bolt://neo-dev.knetminer.com:7687>

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