Merge pull request #116 from SABS-R3-Epidemiology/epiabm-rt-inference

Adding the R_t inference notebooks to the main branch
SABS-R3-Epidemiology · Dec 12, 2024 · 42cffc9 · 42cffc9
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diff --git a/examples/epiabm_rt_inference/northern_ireland/coloured_regions/3_colours_map.png b/examples/epiabm_rt_inference/northern_ireland/coloured_regions/3_colours_map.png
diff --git a/.../epiabm_rt_inference/northern_ireland/coloured_regions/3_colours_prevalence.png b/.../epiabm_rt_inference/northern_ireland/coloured_regions/3_colours_prevalence.png
diff --git a/examples/epiabm_rt_inference/northern_ireland/coloured_regions/coloured_regions.ipynb b/examples/epiabm_rt_inference/northern_ireland/coloured_regions/coloured_regions.ipynb
diff --git a/examples/epiabm_rt_inference/northern_ireland/northern_ireland_further_analysis.ipynb b/examples/epiabm_rt_inference/northern_ireland/northern_ireland_further_analysis.ipynb
diff --git a/examples/epiabm_rt_inference/northern_ireland/northern_ireland_rt_inference.ipynb b/examples/epiabm_rt_inference/northern_ireland/northern_ireland_rt_inference.ipynb
diff --git a/examples/epiabm_rt_inference/northern_ireland/panels/r_0_2/inference_panel_r0_2.pdf b/examples/epiabm_rt_inference/northern_ireland/panels/r_0_2/inference_panel_r0_2.pdf
diff --git a/examples/epiabm_rt_inference/northern_ireland/panels/r_0_2/si_autocorrelations.png b/examples/epiabm_rt_inference/northern_ireland/panels/r_0_2/si_autocorrelations.png
diff --git a/...t_inference/northern_ireland/panels/r_0_2/si_posterior_autocorrelations_r02.png b/...t_inference/northern_ireland/panels/r_0_2/si_posterior_autocorrelations_r02.png
diff --git a/examples/epiabm_rt_inference/northern_ireland/panels/r_0_2/si_seir_outputs.png b/examples/epiabm_rt_inference/northern_ireland/panels/r_0_2/si_seir_outputs.png
diff --git a/examples/epiabm_rt_inference/northern_ireland/panels/r_0_2/simulation_panel_r0.2_3colour.pdf b/examples/epiabm_rt_inference/northern_ireland/panels/r_0_2/simulation_panel_r0.2_3colour.pdf
diff --git a/examples/epiabm_rt_inference/northern_ireland/panels/r_1/epiabm_panel_inkscape.pdf b/examples/epiabm_rt_inference/northern_ireland/panels/r_1/epiabm_panel_inkscape.pdf
diff --git a/examples/epiabm_rt_inference/northern_ireland/panels/r_1/inference_panel_r1.pdf b/examples/epiabm_rt_inference/northern_ireland/panels/r_1/inference_panel_r1.pdf
diff --git a/...ples/epiabm_rt_inference/northern_ireland/panels/r_1/si_autocorrelations_r1.png b/...ples/epiabm_rt_inference/northern_ireland/panels/r_1/si_autocorrelations_r1.png
diff --git a/examples/epiabm_rt_inference/northern_ireland/panels/r_1/si_posteriors_r1.png b/examples/epiabm_rt_inference/northern_ireland/panels/r_1/si_posteriors_r1.png
diff --git a/examples/epiabm_rt_inference/seirmo_rt_inference.ipynb b/examples/epiabm_rt_inference/seirmo_rt_inference.ipynb