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Feature/prioritise X over Y #5

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@h-joshi h-joshi commented Mar 19, 2024

New flag prioritise_X_over_Y to prioritise chromosome X over Y if the same transcript exists in both loci.

PeterKnealeCMRI and others added 30 commits August 14, 2023 13:18
* Make tests runnable locally and on agent
* Update docker container definition to operate on port 8002

* Update to port 8002

* Update examples to work with the sample data
* Issue #18. Add pre-computed outputs for the valid files

* Add readme

* Add readme

* Handle lookup failures

* Update to use two sources

* Update to use two sources

* Add tests that use the ensembl and variant validator files as inputs for comparison

* Refactor tests

* Add commend to execute tests

* Perform comparison tests

* Add instructions for diff

* add http retries

* Add resiliency

* Add complete comparison files
* Install validaotor
* Add normalise script
* Process both sources
* Added report
- Clearly defined API request and response models
- Exposed additional parameters within the API
- Moved testing to pytest-bdd
- Added error handling
Exclude pyc files during build
Added examples based on updated API spec
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