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command line reference
Dave Lawrence edited this page Nov 21, 2022
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1 revision
Substitute ArgumentParser with pyreference.ReferenceArgumentParser to add a --build option to your command line arguments.
args.reference is now initialised to the correct build/annotation.
from pyreference import ReferenceArgumentParser
parser = ReferenceArgumentParser()
parser.add("mirna_name")
args = parser.parse_args()
reference = args.reference.get_mirna(args.mirna_name)
print(mir.get_8mer_target())