issue #1112 - Python 3.12 warnings about string escapes

SACGF · Jul 31, 2024 · 08de042 · 08de042
1 parent 49c72b1
commit 08de042
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Showing 5 changed files with 5 additions and 5 deletions.
diff --git a/classification/models/condition_text_matching.py b/classification/models/condition_text_matching.py
@@ -714,7 +714,7 @@ def embedded_ids_check(text: str) -> ConditionMatchingSuggestion:
                 result_text = text
                 for prefix in ontology_prefixes:
                     # fetch text between the matched term and the next ontology ID
-                    pattern = f"{matched_term.id.lower()}(.*?)({prefix}:\d+)"
+                    pattern = fr"{matched_term.id.lower()}(.*?)({prefix}:\d+)"
                     match = re.search(pattern, text)
                     if match:
                         found = True

diff --git a/genes/hgvs/hgvs_converter.py b/genes/hgvs/hgvs_converter.py
@@ -59,7 +59,7 @@ def _hgvs_string_validation(hgvs_string: str):
         """ raise exceptions on any errors """
 
         if "ins" in hgvs_string:
-            if re.match(".*ins\d+$", hgvs_string):
+            if re.match(r".*ins\d+$", hgvs_string):
                 raise HGVSException("Insertions require inserted sequence, not an integer length")
             if re.match(".*ins$", hgvs_string):
                 raise HGVSException("Insertions require inserted sequence")

diff --git a/seqauto/illumina/samplesheet.py b/seqauto/illumina/samplesheet.py
@@ -11,7 +11,7 @@
 import pandas as pd
 
 ILLUMINA = 'ILLUMINA'
-ILLEGAL_CHARACTERS = "?()[]/\=+<>:;\"',*^|&. "  # From Illumina docs
+ILLEGAL_CHARACTERS = r"?()[]/\=+<>:;\"',*^|&. "  # From Illumina docs
 NO_SPACES_COLUMNS = ['sample_id', 'sample_name']
 
 

diff --git a/uicore/templatetags/js_tags.py b/uicore/templatetags/js_tags.py
@@ -56,7 +56,7 @@ def query_unquote(query_string):
 @register.filter
 def jsstring(text):
     if text:
-        text = text.replace('\\', '\\\\').replace('`', '\`').replace('</script>', '<\\/script>')
+        text = text.replace('\\', '\\\\').replace('`', '\\`').replace('</script>', '<\\/script>')
         return mark_safe(text)
     return ''
 

diff --git a/upload/views/views.py b/upload/views/views.py
@@ -201,7 +201,7 @@ def upload(request):
 
     file_dicts_list = get_file_dicts_list(upload_settings)
     extensions = get_import_tasks_by_extension().keys()
-    accept_file_types = f"/(\.|\/)({'|'.join(extensions)})$/i"
+    accept_file_types = fr"/(\.|\/)({'|'.join(extensions)})$/i"
     context = {'existing_files': file_dicts_list,
                'form': form,
                "upload_enabled": settings.UPLOAD_ENABLED,