Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

HGVS search - complete failure in 1 genome build causes other build to not show #1105

Open
davmlaw opened this issue Jul 8, 2024 · 1 comment

Comments

@davmlaw
Copy link
Contributor

davmlaw commented Jul 8, 2024

Search for "ENST00000642385.2:c.802G>T" comes up wtih:

Search comes up with:

Could not convert ENST00000642385.2:c.802G>T - tried:
CLINGEN_ALLELE_REGISTRY
CLINGEN_ALLELE_REGISTRY as ENST00000642385.1:c.802G>T 

While this should return the 38 result, as that works, see:

Genome Build Tool Result
GRCh37 PyHGVS Fail
GRCh37 Biocommons Fail
GRCh37 ClinGen Fail
GRCh38 PyHGVS OK
GRCh38 Biocommons OK
GRCh38 ClinGen Fail
@davmlaw
Copy link
Contributor Author

davmlaw commented Aug 13, 2024

Might need to come up with a different example as #1137 will fix the above example

davmlaw added a commit that referenced this issue Aug 13, 2024
…ng in other. Make the error simpler for non-admin
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant