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13 Open 1 Closed
13 Open 1 Closed
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Issues list

Prepare Data
#20 opened Oct 22, 2024 by leilaicruz
use neutral genes + distribution to find deviation of high/lowfitness genes
#17 opened Sep 29, 2021 by FloorDolsma
Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms
#16 opened Jul 13, 2021 by leilaicruz
2
Extensible full DAG streaming computation server with services and jobs for RNA-Seq, Tn-Seq, WG-Seq and Term-Seq.
#15 opened Jul 13, 2021 by leilaicruz
1
Calculate chance of getting few transposons due to stochasticity 0-few transposons
#12 opened Jun 18, 2021 by FloorDolsma
Determine upper bound of fitness score for genes without transposons 0-few transposons
#11 opened Jun 18, 2021 by FloorDolsma
Normalize using regional transposon densities Difference Tn density different regions on the genome have different transposon densities
#10 opened Jun 18, 2021 by FloorDolsma
Compensate for centromere bias Difference Tn density different regions on the genome have different transposon densities
#9 opened Jun 18, 2021 by FloorDolsma
Average over datasets of multiple (biological or technical) replicates Statistical noise
#8 opened Jun 18, 2021 by FloorDolsma
Determine onfidence interval for sampling help wanted Extra attention is needed Statistical noise
#7 opened Jun 18, 2021 by FloorDolsma
1 of 2 tasks
1
Outlier analysis Outliers Transposons with significantly high #reads, probably bacause they did not cause a KO
#6 opened Jun 18, 2021 by FloorDolsma
Reference SATAY experiment to find the insertion locations with bias bias_PCR experiment
#5 opened Jun 18, 2021 by FloorDolsma
Take middle 80% of gene with transposons bias_PCR
#4 opened Jun 18, 2021 by leilaicruz
ProTip! What’s not been updated in a month: updated:<2024-10-16.