test behavior some more #139

	name: Test Tutorial
	# following example: https://securitylab.github.com/research/github-actions-preventing-pwn-requests/
	on:
	push:
	branches:
	# - main
	- sroet-patch-1


	jobs:
	test-tutorial:
	runs-on: [self-hosted, linux, x64, gpu]
	container:
	image: continuumio/miniconda3
	options: --runtime=nvidia --gpus all
	defaults:
	run:
	working-directory: ./docs/tutorials
	steps:
	- name: Pull code
	uses: actions/checkout@v4
	- name: Install dependencies, code, and list everything
	working-directory: ./
	run: \|
	conda install -y -c conda-forge python=3 cupy cuda-version=11.8 curl unzip
	python -m pip install coverage mdextractor #mdextractor is new and might need to be replaced later
	python -m pip install .[dev]
	conda list
	- name: Grab files needed for tests
	run: \|
	mkdir dataset
	mkdir templates
	mkdir results_80S
	mkdir results_60S
	cd templates
	cp ../data/6qzp_60S.mrc .
	curl https://files.wwpdb.org/pub/emdb/structures/EMD-2938/map/emd_2938.map.gz -o emd_2938.map.gz
	gunzip emd_2938.map.gz
	mv emd_2938.map emd_2938.mrc
	cd ../dataset
	curl -L -O -J -H "X-Dataverse-key:${{ secrets.DATAVERSE_API_TOKEN }}" https://dataverse.nl/api/access/datafiles/384731,384724,384706,384718
	unzip dataverse_files.zip
	# this inflates into a 'tutorial' folder, moving everything out
	mv tutorial/* .
	- name: Run Tutorial test
	run: \|
	# DEBUG; TODO REMOVE
	ls -l dataset/*

	# Hardcode the conversion line
	for x in dataset/*.mrc; do python -c "import mrcfile; mrc = mrcfile.mmap('$x', 'r+'); mrc.voxel_size = 13.79"; done
	python tests/test_tutorial.py

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