changing name to pytom-match-pick from pytom-template-matching-gpu

README.md

@@ -1,4 +1,4 @@
-![test-badge](https://github.com/SBC-Utrecht/pytom-template-matching-gpu/actions/workflows/unit-tests.yml/badge.svg?branch=main)
+![test-badge](https://github.com/SBC-Utrecht/pytom-match-pick/actions/workflows/unit-tests.yml/badge.svg?branch=main)
 # PyTOM GPU template matching for cryo-ET
 PyTOM's GPU template matching as a single pip plugin that can only be run from the command line.
 
@@ -39,8 +39,8 @@ conda activate pytom_tm
 Then clone the repository and install it with pip (building cupy can take a while!): 
 
 ```commandline
-git clone https://github.com/SBC-Utrecht/pytom-template-matching-gpu.git
-cd pytom-template-matching-gpu
+git clone https://github.com/SBC-Utrecht/pytom-match-pick.git
+cd pytom-match-pick
 python -m pip install '.[plotting]'
 ```
 
@@ -73,9 +73,9 @@ specific build compatible with the installed cuda toolkit.
 
 ## Usage
 
-Detailed usage instructions are available on the wiki: https://github.com/SBC-Utrecht/pytom-template-matching-gpu/wiki
+Detailed usage instructions are available on the wiki: https://github.com/SBC-Utrecht/pytom-match-pick/wiki
 
-Also, a tutorial can be found on the same wiki: https://github.com/SBC-Utrecht/pytom-template-matching-gpu/wiki/Tutorial
+Also, a tutorial can be found on the same wiki: https://github.com/SBC-Utrecht/pytom-match-pick/wiki/Tutorial
 
 The following scripts are available to run with `--help` to see parameters:
 

pyproject.toml

@@ -3,9 +3,9 @@ requires = ["setuptools"]
 build-backend = "setuptools.build_meta"
 
 [project]
-name = "pytom-template-matching-gpu"
+name = "pytom-match-pick"
 version = "0.3.5"
-description = "GPU template matching from PyTOM as a lightweight pip package"
+description = "PyTOM's GPU template matching module as an independent package"
 readme = "README.md"
 license = {file = "LICENSE"}
 authors = [
@@ -51,8 +51,8 @@ plotting = ["matplotlib", "seaborn"]
 "pytom_estimate_roc.py" = "pytom_tm.entry_points:estimate_roc [plotting]"
 
 [project.urls]
-Repository = "https://github.com/SBC-Utrecht/pytom-template-matching-gpu"
-Issues = "https://github.com/SBC-Utrecht/pytom-template-matching-gpu/issues"
+Repository = "https://github.com/SBC-Utrecht/pytom-match-pick"
+Issues = "https://github.com/SBC-Utrecht/pytom-match-pick/issues"
 
 [tool.setuptools]
 packages = ["pytom_tm", "pytom_tm.angle_lists"]

src/pytom_tm/__init__.py

@@ -1,5 +1,5 @@
 from importlib import metadata
-__version__ = metadata.version('pytom-template-matching-gpu')
+__version__ = metadata.version('pytom-match-pick')
 
 try:
     import cupy

src/pytom_tm/tmjob.py

@@ -14,6 +14,7 @@
 from pytom_tm.matching import TemplateMatchingGPU
 from pytom_tm.weights import create_wedge, power_spectrum_profile, profile_to_weighting, create_gaussian_band_pass
 from pytom_tm.io import read_mrc_meta_data, read_mrc, write_mrc, UnequalSpacingError
+from pytom_tm import __version__ as PYTOM_TM_VERSION
 
 
 def load_json_to_tmjob(file_name: pathlib.Path, load_for_extraction: bool = True) -> TMJob:
@@ -101,7 +102,7 @@ def __init__(
             ctf_data: Optional[list[dict, ...]] = None,
             whiten_spectrum: bool = False,
             rotational_symmetry: int = 1,
-            pytom_tm_version_number: str = metadata.version('pytom-template-matching-gpu'),
+            pytom_tm_version_number: str = PYTOM_TM_VERSION,
             job_loaded_for_extraction: bool = False,
     ):
         """