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AG-1575: Release 3.5.0 to production #1345

Merged
merged 57 commits into from
Dec 19, 2024
Merged

AG-1575: Release 3.5.0 to production #1345

merged 57 commits into from
Dec 19, 2024

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JessterB
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hallieswan and others added 30 commits June 5, 2024 16:16
AG-1471, AG-1473, AG-1474: add workflow to create agora/data Docker image and run end-to-end tests
AG-1472: push/pull data images from GHCR
Bumps [braces](https://github.com/micromatch/braces) from 3.0.2 to 3.0.3.
- [Changelog](https://github.com/micromatch/braces/blob/master/CHANGELOG.md)
- [Commits](micromatch/braces@3.0.2...3.0.3)

---
updated-dependencies:
- dependency-name: braces
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
AG-1472: ensure org package is lowercase
…n/braces-3.0.3

Bump braces from 3.0.2 to 3.0.3
AG-1498: support use of containerized data image in local development
AG-1330: combine workflows into one workflow with multiple jobs
AG-1518: rename data release image to distinguish from sage-monorepo image
Bumps [fast-xml-parser](https://github.com/NaturalIntelligence/fast-xml-parser) and [@aws-sdk/credential-providers](https://github.com/aws/aws-sdk-js-v3/tree/HEAD/packages/credential-providers). These dependencies needed to be updated together.

Updates `fast-xml-parser` from 4.2.5 to 4.4.1
- [Release notes](https://github.com/NaturalIntelligence/fast-xml-parser/releases)
- [Changelog](https://github.com/NaturalIntelligence/fast-xml-parser/blob/master/CHANGELOG.md)
- [Commits](NaturalIntelligence/fast-xml-parser@v4.2.5...v4.4.1)

Updates `@aws-sdk/credential-providers` from 3.398.0 to 3.624.0
- [Release notes](https://github.com/aws/aws-sdk-js-v3/releases)
- [Changelog](https://github.com/aws/aws-sdk-js-v3/blob/main/packages/credential-providers/CHANGELOG.md)
- [Commits](https://github.com/aws/aws-sdk-js-v3/commits/v3.624.0/packages/credential-providers)

---
updated-dependencies:
- dependency-name: fast-xml-parser
  dependency-type: indirect
- dependency-name: "@aws-sdk/credential-providers"
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
…n/multi-cf223b3bed

Bump fast-xml-parser and @aws-sdk/credential-providers
AG-1395: Bump to mv70 (display) in dev
AG-1395: Fix typo in manifest version value
sagely1 and others added 27 commits November 26, 2024 16:54
AG-1488: Added new resource cards in Resources tab
AG-1486: Remove druggability section in gene details resources tab
…e-hero

AG-1257: Add pharos class to hero
AG-1488: Updates to resource cards and ordering
…n-gene-hero

AG-1539: adding uniprotkb_accessions links
updating docker-compose to docker compose
AG-1569 - fix GHA workflow failing
AG-1599 - handle a list of pharos class values
* AG-1471: install synapseclient, download release data from Synpase

* AG-1473: create mongo image containing release data

* AG-1474: run e2e tests

* AG-1471: do not run job on pull_request trigger since forks do not have access to secrets

* AG-1472: check if image exists in GHCR, then build/push image if needed

* AG-1472: split workflow into three jobs

* AG-1472: handle case where package has not yet been created

* AG-1472: remove forward slash from package name so gh call works

* AG-1472: ensure e2e tests are run when image has already been built

* AG-1472: improvements from code review

* Bump braces from 3.0.2 to 3.0.3

Bumps [braces](https://github.com/micromatch/braces) from 3.0.2 to 3.0.3.
- [Changelog](https://github.com/micromatch/braces/blob/master/CHANGELOG.md)
- [Commits](micromatch/braces@3.0.2...3.0.3)

---
updated-dependencies:
- dependency-name: braces
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* AG-1472: ensure org package is lowercase

* AG-1498: support use of containerized data image in local development [skip ci]

* AG-1330: combine workflows into one workflow with multiple jobs

* AG-1518: rename data release image to distinguish from sage-monorepo image

* Bump fast-xml-parser and @aws-sdk/credential-providers

Bumps [fast-xml-parser](https://github.com/NaturalIntelligence/fast-xml-parser) and [@aws-sdk/credential-providers](https://github.com/aws/aws-sdk-js-v3/tree/HEAD/packages/credential-providers). These dependencies needed to be updated together.

Updates `fast-xml-parser` from 4.2.5 to 4.4.1
- [Release notes](https://github.com/NaturalIntelligence/fast-xml-parser/releases)
- [Changelog](https://github.com/NaturalIntelligence/fast-xml-parser/blob/master/CHANGELOG.md)
- [Commits](NaturalIntelligence/fast-xml-parser@v4.2.5...v4.4.1)

Updates `@aws-sdk/credential-providers` from 3.398.0 to 3.624.0
- [Release notes](https://github.com/aws/aws-sdk-js-v3/releases)
- [Changelog](https://github.com/aws/aws-sdk-js-v3/blob/main/packages/credential-providers/CHANGELOG.md)
- [Commits](https://github.com/aws/aws-sdk-js-v3/commits/v3.624.0/packages/credential-providers)

---
updated-dependencies:
- dependency-name: fast-xml-parser
  dependency-type: indirect
- dependency-name: "@aws-sdk/credential-providers"
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump to mv70 (display) in dev

* AG-1395: Fix typo in manifest version value

* removed druggability section in gene details resources tab

* added new resource cards in Resources tab

* adding pharos class to hero

* updated section title from PHAROS to PHAROS CLASS

* Adjust ordering of resource sections

* Update resource strings and URLs

* Update mongoDB install URLs in README

* adding uniprotkb_accessions links

* applied a margin under subheadings biodomains and pharos class

* adding margin to subitems in hero

* added new uniprotkb_accessions property to mocks

* Update ci.yml

updating docker-compose to docker compose

* AG-1565 remove druggability columns

* AG-1599 remove pharos class

* fix pharos class schema bug

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: Hallie Swan <[email protected]>
Co-authored-by: sagely1 <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jessica Britton <[email protected]>
Co-authored-by: JessterB <[email protected]>
AG-1574: 3.5.0 RC + mv71 to staging
@JessterB JessterB merged commit d230b5d into prod Dec 19, 2024
7 checks passed
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4 participants