Skip to content

Analysis scRNA data of CD45+ sorted cells from BCLM PyMT model

Notifications You must be signed in to change notification settings

Scheket/scRNA_BCLM_PyMT

 
 

Repository files navigation

CD45+ cells were isolated from the lungs of PyMT-injected WT and ΔdblGATA mice and processed using droplet-based scRNA technique.

Raw data were received as fastq files and Scanpy library for python (v1.9.6) was used for analysing single-cell gene expression data. This analysis includes pre-processing, visualization, clustering, ORA, trajectory inference and differential expression testing.

About

Analysis scRNA data of CD45+ sorted cells from BCLM PyMT model

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages

  • Jupyter Notebook 99.9%
  • Python 0.1%