Releases: SchlossLab/new_project
Updated reference files
Modify makefile to work
There were a few problems getting Makefile to be compatible with running on AWS. These are now solved.
Small change to be compatible with mothur v1.40
- Corrects typo in get_good_seqs
Reproducible Research Modules Release
This is the version of new_project that will be used in the Reproducible Research modules
RR Workshop 2017-05
Updated version of template. Notable changes include using manuscript.* for the name of the submission documents.
rr workshop version
v0.9 Correct names of mock communities
Add mothur processing files
- Includes basic mothur processing batch files
- Add Makefile rules for running mothur analysis
Fleshing out template w/ Instructions and folder reorganization
This release...
- Includes more instructions for use of this repository with projects in the Schloss lab
- Creates a folder for submission documents
- Reorganizes the exploratory type analysis into the exploratory/ folder
- Includes more direction on how to use Rmd files to generate TeX and pdf files
Instructions on contributing
GitHub allows you to add a CONTRIBUTING file to give instructions to people that are going to file an Issue or Pull Request. You can customize this file to indicate to others the best way to make contributions or ask questions.
Change data folder reorganization
Was confounded about how we could make terminal data files generally accessible. For example, others might want the shared file without having to re-run all of the code. At the same time, we don't want all of the raw files and intermediate files in the repository. So create a data/mothur folder that contains all of the data processing and then put data/process under version control so that it is uploaded to the repository.