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2 changes: 2 additions & 0 deletions README.md
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2. Open hmtl slides using firefox on a local server.
```
firefox http://127.0.0.1:4000 #or google-chrome http://127.0.0.1:4000
firefox http://127.0.0.1:4000/pre-workshop-slides/
firefox http://127.0.0.1:4000/work-achieved/
```
3. You might like to remove build files
```
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890 changes: 8 additions & 882 deletions figures/automatic-deployment-with-gh-actions/vectors/drawing-v00.svg
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469 changes: 44 additions & 425 deletions figures/model-deployment/vectors/drawing-v00.svg
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394 changes: 345 additions & 49 deletions figures/real-time-ai-workflow-for-surgery/vectors/drawing-v00.svg
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75 changes: 70 additions & 5 deletions work-achieved/index.html
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<!-- =================================================================== -->

<!-- First slide -->
<section id="workflow" class="slide level2">
<h2>real[good]time</h2>
<section id="title-slide" class="quarto-title-block center">
<h2 class="title">
<!-- Title of the slides -->
🔩 Hacking Real-time AI workflows for Surgery 🔧
</h2>

<img src = "../figures/team-logo.png" style="max-width: 105%;" ></img>
<!--
-->

<p class="subtitle">
</p>
CMIC seminar

<div class="quarto-title-authors">
<div class="quarto-title-author">

<div class="quarto-title-author-name">
Zhehua Mao
<a href="https://orcid.org/0000-0000-0000-0000" class="quarto-title-author-orcid">
<img src="data:image/png;base64,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"></a>

and Miguel Xochicale
<a href="https://orcid.org/0000-0002-8225-7517" class="quarto-title-author-orcid">
<img src="data:image/png;base64,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"></a>

</div>
<p class="quarto-title-affiliation"> ARC/WEISS at UCL </p> </div>
</div>

<p class="date">Wednesday, 15th of November 2023, 13:00 GMT</p>

</section>

Expand Down Expand Up @@ -317,7 +343,7 @@ <h2>🚀 Real-time AI Workflow for Surgery</h2>

<!-- New slide -->
<section id="model-deployment" class="slide level2">
<h2>🔁 Model deployment </h2>
<h2>🔁🏥 Model deployment using IEC 62304</h2>

<a href="https://github.com/SciKit-Surgery/cmicHACKS2/">
<img src = "../figures/model-deployment/outputs/drawing-v00.png" style="max-width: 110%;" ></img>
Expand All @@ -330,7 +356,7 @@ <h2>🔁 Model deployment </h2>

<!-- New slide -->
<section id="github-actions" class="slide level2">
<h2>🌐 Automatic deployment of GitHub pages</h2>
<h2>🌐 Automatic deployment of gh-pages</h2>

<a href="https://github.com/SciKit-Surgery/cmicHACKS2/">
<img src = "../figures/automatic-deployment-with-gh-actions/outputs/drawing-v00.png" style="max-width: 110%;" ></img>
Expand All @@ -341,6 +367,45 @@ <h2>🌐 Automatic deployment of GitHub pages</h2>
</section>



<!-- New slide -->
<section id="takeaways" class="slide level2">
<h2> Takeaways</h2>

<ul class="roman">

<li style="font-size:30px";>
Employed annotation open-source tools (e.g., Labelme and foundation model Segment Anything Model (SAM)).
</li>

<li style="font-size:30px";>
Prototyped Software problem resolution (Clause 9) following IEC 62304 standard.
</li>

<li style="font-size:30px";>
Participants trained models, investigating hyperparameter effects and data enhancement parameters.
</li>

<li style="font-size:30px";>
Testing and evaluation of trained models, and optimizing of real-time performance.
</li>

<li style="font-size:30px";>
Collaborated with NVIDIA engineer for exploring and deploying the optimized models on NVIDIA's cutting-edge device, Clara AGX.
</li>

<li style="font-size:30px";>
Produced an automatic deployment of GitHub pages as way to improve accessibility of our work.
</li>

<li style="font-size:30px";>
Documented the entire learning process on GitHub.
</li>

</ul>

</section>

<!-- New slide -->
<section id="team" class="slide level2">
<h2>🏆 Best team name</h2>
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