improves figures; adds takeaways, main slide and references #36

program/day-one/README.md

@@ -67,6 +67,11 @@ IEEE Access. 2021 Mar 4;9:40496-40510. doi: 10.1109/ACCESS.2021.3063716. PMID: 3
 [google-citations](https://scholar.google.com/scholar?cites=11882550127852592683&as_sdt=2005&sciodt=0,5&hl=en)
 
 
+Martina, Maria Raffaella, Elisabetta Bianchini, Sara Sinceri, Martina Francesconi, and Vincenzo Gemignani. 
+"Software medical device maintenance: DevOps based approach for problem and modification management." 
+Journal of Software: Evolution and Process (2023): e2570.
+[google-scholar](https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=%22Software+medical+device+maintenance%3A+DevOps+based+approach+for+problem+and+modification+management.%22+&btnG=)
+
 "Confidently Navigating Software as a Medical Device (SaMD) Product Development"
 June 15, 2023, Josh Cates, Tim Thirion and Andinet Enquobahrie
 https://www.kitware.com/confidently-navigating-software-as-a-medical-device-samd-product-development/ 

slides/README.md

@@ -38,6 +38,8 @@ bundle exec jekyll serve
 2. Open hmtl slides using firefox on a local server.
 ```
 firefox http://127.0.0.1:4000 #or google-chrome http://127.0.0.1:4000
+firefox http://127.0.0.1:4000/pre-workshop-slides/
+firefox http://127.0.0.1:4000/work-achieved/
 ```
 3. You might like to remove build files
 ```

slides/work-achieved/index.html

@@ -279,10 +279,36 @@
 <!-- =================================================================== -->
 
 <!-- First slide -->
-<section id="workflow" class="slide level2">
-  <h2>real[good]time</h2>
+<section id="title-slide" class="quarto-title-block center">
+  <h2 class="title">
+    <!-- Title of the slides -->
+	🔩 Hacking Real-time AI workflows for Surgery 🔧
+  </h2>
 
-    <img src = "../figures/team-logo.png" style="max-width: 105%;" ></img>
+  <!-- 
+-->
+
+<p class="subtitle"> 
+</p> 
+CMIC seminar
+
+<div class="quarto-title-authors">
+<div class="quarto-title-author">
+
+<div class="quarto-title-author-name">
+Zhehua Mao 
+<a href="https://orcid.org/0000-0000-0000-0000" class="quarto-title-author-orcid"> 
+  <img src="data:image/png;base64,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"></a>
+
+and Miguel Xochicale 
+  <a href="https://orcid.org/0000-0002-8225-7517" class="quarto-title-author-orcid"> 
+    <img src="data:image/png;base64,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"></a>
+
+  </div> 
+<p class="quarto-title-affiliation"> ARC/WEISS at UCL </p> </div>
+</div>
+
+<p class="date">Wednesday, 15th of November 2023, 13:00 GMT</p>
 
 </section>
 
@@ -317,7 +343,7 @@ <h2>🚀 Real-time AI Workflow for Surgery</h2>
 
 <!-- New slide -->
 <section id="model-deployment" class="slide level2">
-  <h2>🔁 Model deployment </h2>
+  <h2>🔁🏥 Model deployment using IEC 62304</h2>
 
   <a href="https://github.com/SciKit-Surgery/cmicHACKS2/">
     <img src = "../figures/model-deployment/outputs/drawing-v00.png" style="max-width: 110%;" ></img>
@@ -330,7 +356,7 @@ <h2>🔁 Model deployment </h2>
 
 <!-- New slide -->
 <section id="github-actions" class="slide level2">
-  <h2>🌐 Automatic deployment of GitHub pages</h2>
+  <h2>🌐 Automatic deployment of gh-pages</h2>
 
   <a href="https://github.com/SciKit-Surgery/cmicHACKS2/">
   <img src = "../figures/automatic-deployment-with-gh-actions/outputs/drawing-v00.png" style="max-width: 110%;" ></img>
@@ -341,6 +367,45 @@ <h2>🌐 Automatic deployment of GitHub pages</h2>
   </section>
 
 
+
+<!-- New slide -->
+<section id="takeaways" class="slide level2">
+  <h2> Takeaways</h2>
+
+  <ul class="roman">
+
+  <li style="font-size:30px";>
+  Employed annotation open-source tools (e.g., Labelme and foundation model Segment Anything Model (SAM)).
+  </li>
+
+  <li style="font-size:30px";>
+    Prototyped Software problem resolution (Clause 9) following IEC 62304 standard.
+  </li>
+
+  <li style="font-size:30px";>
+    Participants trained models, investigating hyperparameter effects and data enhancement parameters.
+  </li>
+
+  <li style="font-size:30px";>
+    Testing and evaluation of trained models, and optimizing of real-time performance.
+  </li>
+
+  <li style="font-size:30px";>
+    Collaborated with NVIDIA engineer for exploring and deploying the optimized models on NVIDIA's cutting-edge device, Clara AGX.
+  </li>
+
+  <li style="font-size:30px";>
+    Produced an automatic deployment of GitHub pages as way to improve accessibility of our work.
+  </li>
+
+  <li style="font-size:30px";>
+    Documented the entire learning process on GitHub.
+  </li>
+
+  </ul>
+
+  </section>
+
 <!-- New slide -->
 <section id="team" class="slide level2">
   <h2>🏆 Best team name</h2>