Updates to tests (lint, coverage, ci) #37

.coveragerc

@@ -1,4 +1,4 @@
 [run]
 omit = 
-        ./snappytutorial01/_version.py
-        ./snappytutorial01/__init__.py
+        ./sksurgerytutorial01/_version.py
+        ./sksurgerytutorial01/__init__.py

.github/workflows/ci.yml

@@ -8,7 +8,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-latest, windows-latest, macos-latest]
+        os: [ubuntu-latest, windows-latest]
         python-ver: [3.7, 3.8]
         experimental: [false]
         exclude:
@@ -64,7 +64,7 @@ jobs:
       - name: Run tests using xvfb (Ubuntu)
         if: startsWith(matrix.os, 'ubuntu')
         run: |
-          sudo apt-get install xvfb libxkbcommon-x11-0
+          sudo apt-get install xvfb libxkbcommon-x11-0 libgl1
           sudo Xvfb :1 -screen 0 1024x768x24 </dev/null &
           export DISPLAY=":1"
           export LD_LIBRARY_PATH=$pythonLocation"/lib/python3.6/site-packages/PySide2/Qt/plugins/platfoms"

tests/pylintrc

@@ -32,17 +32,7 @@ unsafe-load-any-extension=no
 # A comma-separated list of package or module names from where C extensions may
 # be loaded. Extensions are loading into the active Python interpreter and may
 # run arbitrary code
-extension-pkg-whitelist=numpy,PySide2,cv2,vtk
-
-# Allow optimization of some AST trees. This will activate a peephole AST
-# optimizer, which will apply various small optimizations. For instance, it can
-# be used to obtain the result of joining multiple strings with the addition
-# operator. Joining a lot of strings can lead to a maximum recursion error in
-# Pylint and this flag can prevent that. It has one side effect, the resulting
-# AST will be different than the one from reality. This option is deprecated
-# and it will be removed in Pylint 2.0.
-optimize-ast=no
-
+extension-pkg-whitelist=numpy
 
 [MESSAGES CONTROL]
 
@@ -56,17 +46,6 @@ confidence=
 # it should appear only once). See also the "--disable" option for examples.
 #enable=
 
-# Disable the message, report, category or checker with the given id(s). You
-# can either give multiple identifiers separated by comma (,) or put this
-# option multiple times (only on the command line, not in the configuration
-# file where it should appear only once).You can also use "--disable=all" to
-# disable everything first and then reenable specific checks. For example, if
-# you want to run only the similarities checker, you can use "--disable=all
-# --enable=similarities". If you want to run only the classes checker, but have
-# no Warning level messages displayed, use"--disable=all --enable=classes
-# --disable=W"
-disable=long-suffix,standarderror-builtin,indexing-exception,delslice-method,unichr-builtin,dict-view-method,parameter-unpacking,unicode-builtin,cmp-builtin,intern-builtin,round-builtin,backtick,nonzero-method,xrange-builtin,coerce-method,raw_input-builtin,old-division,filter-builtin-not-iterating,old-octal-literal,input-builtin,map-builtin-not-iterating,buffer-builtin,basestring-builtin,zip-builtin-not-iterating,using-cmp-argument,unpacking-in-except,old-raise-syntax,coerce-builtin,dict-iter-method,hex-method,range-builtin-not-iterating,useless-suppression,cmp-method,print-statement,reduce-builtin,file-builtin,long-builtin,getslice-method,execfile-builtin,no-absolute-import,metaclass-assignment,oct-method,reload-builtin,import-star-module-level,suppressed-message,apply-builtin,raising-string,next-method-called,setslice-method,old-ne-operator,arguments-differ,wildcard-import,locally-disabled
-
 
 [REPORTS]
 
@@ -75,12 +54,6 @@ disable=long-suffix,standarderror-builtin,indexing-exception,delslice-method,uni
 # mypackage.mymodule.MyReporterClass.
 output-format=text
 
-# Put messages in a separate file for each module / package specified on the
-# command line instead of printing them on stdout. Reports (if any) will be
-# written in a file name "pylint_global.[txt|html]". This option is deprecated
-# and it will be removed in Pylint 2.0.
-files-output=no
-
 # Tells whether to display a full report or only the messages
 reports=yes
 
@@ -118,64 +91,33 @@ property-classes=abc.abstractproperty
 # Regular expression matching correct variable names
 variable-rgx=[a-z_][a-z0-9_]{2,30}$
 
-# Naming hint for variable names
-variable-name-hint=[a-z_][a-z0-9_]{2,30}$
-
 # Regular expression matching correct class attribute names
 class-attribute-rgx=([A-Za-z_][A-Za-z0-9_]{2,30}|(__.*__))$
 
-# Naming hint for class attribute names
-class-attribute-name-hint=([A-Za-z_][A-Za-z0-9_]{2,30}|(__.*__))$
-
 # Regular expression matching correct argument names
 argument-rgx=[a-z_][a-z0-9_]{2,30}$
 
-# Naming hint for argument names
-argument-name-hint=[a-z_][a-z0-9_]{2,30}$
-
 # Regular expression matching correct module names
 module-rgx=(([a-z_][a-z0-9_]*)|([A-Z][a-zA-Z0-9]+))$
 
-# Naming hint for module names
-module-name-hint=(([a-z_][a-z0-9_]*)|([A-Z][a-zA-Z0-9]+))$
-
 # Regular expression matching correct constant names
-# changed to lower case as we're writing little scripts.
-const-rgx=(([a-z_][a-z0-9_]*)|(__.*__))$
-
-# Naming hint for constant names
-const-name-hint=(([A-Z_][A-Z0-9_]*)|(__.*__))$
+const-rgx=(([A-Z_][A-Z0-9_]*)|(__.*__))$
 
 # Regular expression matching correct inline iteration names
 inlinevar-rgx=[A-Za-z_][A-Za-z0-9_]*$
 
-# Naming hint for inline iteration names
-inlinevar-name-hint=[A-Za-z_][A-Za-z0-9_]*$
-
 # Regular expression matching correct method names
 method-rgx=[a-z_][a-z0-9_]{2,30}$
 
-# Naming hint for method names
-method-name-hint=[a-z_][a-z0-9_]{2,30}$
-
 # Regular expression matching correct function names
 function-rgx=[a-z_][a-z0-9_]{2,30}$
 
-# Naming hint for function names
-function-name-hint=[a-z_][a-z0-9_]{2,30}$
-
 # Regular expression matching correct attribute names
 attr-rgx=[a-z_][a-z0-9_]{2,30}$
 
-# Naming hint for attribute names
-attr-name-hint=[a-z_][a-z0-9_]{2,30}$
-
 # Regular expression matching correct class names
 class-rgx=[A-Z_][a-zA-Z0-9]+$
 
-# Naming hint for class names
-class-name-hint=[A-Z_][a-zA-Z0-9]+$
-
 # Regular expression which should only match function or class names that do
 # not require a docstring.
 #no-docstring-rgx=^test_
@@ -203,12 +145,6 @@ ignore-long-lines=^\s*(# )?<?https?://\S+>?$
 # else.
 single-line-if-stmt=y
 
-# List of optional constructs for which whitespace checking is disabled. `dict-
-# separator` is used to allow tabulation in dicts, etc.: {1  : 1,\n222: 2}.
-# `trailing-comma` allows a space between comma and closing bracket: (a, ).
-# `empty-line` allows space-only lines.
-no-space-check=trailing-comma,dict-separator
-
 # Maximum number of lines in a module
 max-module-lines=1000
 
@@ -278,7 +214,7 @@ ignore-mixin-members=yes
 # (useful for modules/projects where namespaces are manipulated during runtime
 # and thus existing member attributes cannot be deduced by static analysis. It
 # supports qualified module names, as well as Unix pattern matching.
-ignored-modules=PySide2,cv2,sksurgeryvtk,numpy
+ignored-modules=
 
 # List of class names for which member attributes should not be checked (useful
 # for classes with dynamically set attributes). This supports the use of
@@ -315,7 +251,7 @@ callbacks=cb_,_cb
 
 # List of qualified module names which can have objects that can redefine
 # builtins.
-redefining-builtins-modules=six.moves,future.builtins
+redefining-builtins-modules=future.builtins
 
 
 [CLASSES]
@@ -405,4 +341,4 @@ analyse-fallback-blocks=no
 
 # Exceptions that will emit a warning when being caught. Defaults to
 # "Exception"
-overgeneral-exceptions=Exception
+overgeneral-exceptions=builtins.Exception