modified: README.md

modified: setup.py modified: tiddit/__main__.py
SciLifeLab · Jan 25, 2023 · f75f7cd · f75f7cd
1 parent 92ab8d7
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diff --git a/README.md b/README.md
@@ -42,23 +42,13 @@ TIDDIT may be installed using bioconda:
 ```
 conda install tiddit
 ```
-
-Next, you may run TIDDIT like this:
-```
-tiddit --help
-tiddit --sv
-tiddit --cov
-```
 
-TIDDIT is also distributed with a Docker container (http://singularity.lbl.gov/index.html). Type the following command to download the container:
+or using the docker image on biocontainers
 ```
-singularity pull --name TIDDIT.simg 
+docker pull quay.io/biocontainers/tiddit:<tag>
 ```
+visit https://quay.io/repository/biocontainers/tiddit?tab=tags for tags.
 
-Type the following to run tiddit:
-```
-singularity exec TIDDIT.simg tiddit
-```
 
 The SV module
 =============

diff --git a/setup.py b/setup.py
@@ -20,7 +20,7 @@
 
 setup(
     name = 'tiddit',
-    version = '3.5.0',
+    version = '3.5.1',
 
     url = "https://github.com/SciLifeLab/TIDDIT",
     author = "Jesper Eisfeldt",

diff --git a/tiddit/__main__.py b/tiddit/__main__.py
@@ -17,7 +17,7 @@
 import tiddit.tiddit_contig_analysis as tiddit_contig_analysis
 
 def main():
-	version="3.5.0"
+	version="3.5.1"
 	parser = argparse.ArgumentParser("""tiddit-{}""".format(version),add_help=False)
 	parser.add_argument("--sv"	 , help="call structural variation", required=False, action="store_true")
 	parser.add_argument("--cov"        , help="generate a coverage bed file", required=False, action="store_true")