build based on 627e5a0

SciML · Oct 26, 2023 · 7a6fc69 · 7a6fc69
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diff --git a/dev/.documenter-siteinfo.json b/dev/.documenter-siteinfo.json
@@ -1 +1 @@
-{"documenter":{"julia_version":"1.9.3","generation_timestamp":"2023-10-20T03:15:48","documenter_version":"1.1.1"}}
+{"documenter":{"julia_version":"1.9.3","generation_timestamp":"2023-10-26T20:44:11","documenter_version":"1.1.2"}}
diff --git a/dev/assets/Manifest.toml b/dev/assets/Manifest.toml
@@ -32,9 +32,9 @@ version = "0.4.4"
 
 [[deps.Adapt]]
 deps = ["LinearAlgebra", "Requires"]
-git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24"
+git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433"
 uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
-version = "3.6.2"
+version = "3.7.1"
 weakdeps = ["StaticArrays"]
 
     [deps.Adapt.extensions]
@@ -203,9 +203,9 @@ version = "0.3.12"
 
 [[deps.ChainRules]]
 deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"]
-git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3"
+git-tree-sha1 = "7e4f5593e7e1ab923cebc5414f6d5433872cdd19"
 uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
-version = "1.55.0"
+version = "1.56.0"
 
 [[deps.ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra"]
@@ -369,9 +369,9 @@ version = "1.9.1"
 
 [[deps.DiffEqBase]]
 deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "95b6df71e218379a831874215b0effaac791d7d7"
+git-tree-sha1 = "36a590efdbee58b38f903ffc3b378f4a5336bc3f"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.133.1"
+version = "6.134.0"
 
     [deps.DiffEqBase.extensions]
     DiffEqBaseDistributionsExt = "Distributions"
@@ -409,9 +409,9 @@ version = "2.33.1"
 
 [[deps.DiffEqGPU]]
 deps = ["Adapt", "ChainRulesCore", "DiffEqBase", "Distributed", "DocStringExtensions", "ForwardDiff", "KernelAbstractions", "LinearAlgebra", "LinearSolve", "MuladdMacro", "Parameters", "Random", "RecursiveArrayTools", "Requires", "SciMLBase", "Setfield", "SimpleDiffEq", "StaticArrays", "TOML", "ZygoteRules"]
-path = "/var/lib/buildkite-agent/builds/gpuci-12/julialang/diffeqgpu-dot-jl"
+path = "/var/lib/buildkite-agent/builds/gpuci-16/julialang/diffeqgpu-dot-jl"
 uuid = "071ae1c0-96b5-11e9-1965-c90190d839ea"
-version = "3.1.0"
+version = "3.2.0"
 
     [deps.DiffEqGPU.extensions]
     AMDGPUExt = ["AMDGPU"]
@@ -484,9 +484,9 @@ version = "0.9.3"
 
 [[deps.Documenter]]
 deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "Dates", "DocStringExtensions", "Downloads", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "Test", "Unicode"]
-git-tree-sha1 = "147a3cbb6ddcd9448fe5e6c426b347efc68f9c86"
+git-tree-sha1 = "662fb21ae7fad33e044c2b59ece832fdce32c171"
 uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
-version = "1.1.1"
+version = "1.1.2"
 
 [[deps.Downloads]]
 deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
@@ -930,16 +930,20 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d"
 version = "3.0.0+1"
 
 [[deps.LLVM]]
-deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"]
-git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366"
+deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"]
+git-tree-sha1 = "c879e47398a7ab671c782e02b51a4456794a7fa3"
 uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
-version = "6.3.0"
+version = "6.4.0"
+weakdeps = ["BFloat16s"]
+
+    [deps.LLVM.extensions]
+    BFloat16sExt = "BFloat16s"
 
 [[deps.LLVMExtra_jll]]
 deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2"
+git-tree-sha1 = "a84f8f1e8caaaa4e3b4c101306b9e801d3883ace"
 uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab"
-version = "0.0.26+0"
+version = "0.0.27+0"
 
 [[deps.LLVMOpenMP_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -1081,9 +1085,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
 [[deps.LinearSolve]]
 deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
-git-tree-sha1 = "31353ba539d14a342908f765407abffd8db5f3c7"
+git-tree-sha1 = "5f97525abf8d81f9554e836a7e5802fd89bb0594"
 uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
-version = "2.11.0"
+version = "2.12.1"
 
     [deps.LinearSolve.extensions]
     LinearSolveBandedMatricesExt = "BandedMatrices"
@@ -1273,9 +1277,9 @@ version = "1.2.0"
 
 [[deps.NonlinearSolve]]
 deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"]
-git-tree-sha1 = "ee92770e0832314ccd424d83a0ab4c75fc6dc91f"
+git-tree-sha1 = "9203b3333c9610664de2e8cbc23cfd726663df7d"
 uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
-version = "2.3.0"
+version = "2.4.0"
 
     [deps.NonlinearSolve.extensions]
     NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt"
@@ -1657,9 +1661,9 @@ version = "0.1.0"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "9c4f861661e72d9257834d8e517d4511e91ca43b"
+git-tree-sha1 = "151c322c309d879d114d1c0bee69c61d5933357f"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.4.2"
+version = "2.4.3"
 
     [deps.SciMLBase.extensions]
     SciMLBasePyCallExt = "PyCall"
@@ -1687,9 +1691,9 @@ version = "0.3.6"
 
 [[deps.SciMLSensitivity]]
 deps = ["ADTypes", "Adapt", "ArrayInterface", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "Functors", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SparseDiffTools", "StaticArraysCore", "Statistics", "StochasticDiffEq", "Tracker", "TruncatedStacktraces", "Zygote", "ZygoteRules"]
-git-tree-sha1 = "4e20e348a2c6707d33fab25c1dbb1f11e176fc30"
+git-tree-sha1 = "0c97f476daa17ceedb7e743f70cd25a4bb1a0e54"
 uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1"
-version = "7.43.0"
+version = "7.46.0"
 
 [[deps.Scratch]]
 deps = ["Dates"]
@@ -1734,9 +1738,9 @@ version = "1.11.0"
 
 [[deps.SimpleNonlinearSolve]]
 deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PackageExtensionCompat", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"]
-git-tree-sha1 = "e308d089f5d0e733a017b61784c5813e672f760d"
+git-tree-sha1 = "15ff97fa4881133caa324dacafe28b5ac47ad8a2"
 uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7"
-version = "0.1.22"
+version = "0.1.23"
 weakdeps = ["NNlib"]
 
     [deps.SimpleNonlinearSolve.extensions]
@@ -1931,9 +1935,9 @@ version = "1.0.1"
 
 [[deps.Tables]]
 deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"]
-git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead"
+git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "1.11.0"
+version = "1.11.1"
 
 [[deps.Tar]]
 deps = ["ArgTools", "SHA"]
@@ -2288,9 +2292,9 @@ version = "1.5.5+0"
 
 [[deps.Zygote]]
 deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"]
-git-tree-sha1 = "90cc0e19831780e8a03623a59db4730d96045303"
+git-tree-sha1 = "5ded212acd815612df112bb895ef3910c5a03f57"
 uuid = "e88e6eb3-aa80-5325-afca-941959d7151f"
-version = "0.6.66"
+version = "0.6.67"
 weakdeps = ["Colors", "Distances", "Tracker"]
 
     [deps.Zygote.extensions]
@@ -2300,9 +2304,9 @@ weakdeps = ["Colors", "Distances", "Tracker"]
 
 [[deps.ZygoteRules]]
 deps = ["ChainRulesCore", "MacroTools"]
-git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d"
+git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184"
 uuid = "700de1a5-db45-46bc-99cf-38207098b444"
-version = "0.2.3"
+version = "0.2.4"
 
 [[deps.eudev_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"]

diff --git a/dev/examples/ad/index.html b/dev/examples/ad/index.html
@@ -66,4 +66,4 @@
 @time sol = solve(monteprob, Tsit5(), EnsembleGPUArray(CUDA.CUDABackend()),
     trajectories = 10_000,
     saveat = 1.0f0)</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">EnsembleSolution Solution of length 10000 with uType:
-SciMLBase.ODESolution{ForwardDiff.Dual{Nothing, Float64, 3}, 2, uType, Nothing, Nothing, Vector{Float32}, rateType, SciMLBase.ODEProblem{Vector{ForwardDiff.Dual{Nothing, Float64, 3}}, Tuple{Float32, Float32}, true, Vector{Float32}, SciMLBase.ODEFunction{true, SciMLBase.FullSpecialize, typeof(Main.lorenz), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}, SciMLBase.StandardODEProblem}, OrdinaryDiffEq.Tsit5{typeof(OrdinaryDiffEq.trivial_limiter!), typeof(OrdinaryDiffEq.trivial_limiter!), Static.False}, IType, DiffEqBase.Stats, Nothing} where {uType, rateType, IType}</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../sde/">« GPU Parallel Solving of Stochastic Differential Equations</a><a class="docs-footer-nextpage" href="../reductions/">Batched Reductions for Lowering Peak Memory Requirements »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.1 on <span class="colophon-date" title="Friday 20 October 2023 03:15">Friday 20 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+SciMLBase.ODESolution{ForwardDiff.Dual{Nothing, Float64, 3}, 2, uType, Nothing, Nothing, Vector{Float32}, rateType, SciMLBase.ODEProblem{Vector{ForwardDiff.Dual{Nothing, Float64, 3}}, Tuple{Float32, Float32}, true, Vector{Float32}, SciMLBase.ODEFunction{true, SciMLBase.FullSpecialize, typeof(Main.lorenz), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}, SciMLBase.StandardODEProblem}, OrdinaryDiffEq.Tsit5{typeof(OrdinaryDiffEq.trivial_limiter!), typeof(OrdinaryDiffEq.trivial_limiter!), Static.False}, IType, DiffEqBase.Stats, Nothing} where {uType, rateType, IType}</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../sde/">« GPU Parallel Solving of Stochastic Differential Equations</a><a class="docs-footer-nextpage" href="../reductions/">Batched Reductions for Lowering Peak Memory Requirements »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.2 on <span class="colophon-date" title="Thursday 26 October 2023 20:44">Thursday 26 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
diff --git a/dev/examples/bruss/index.html b/dev/examples/bruss/index.html
@@ -89,4 +89,4 @@
  11.5
 u: 2-element Vector{CUDA.CuArray{Float64, 3, CUDA.Mem.DeviceBuffer}}:
  [0.0 0.12134432813715873 … 0.1213443281371586 0.0; 0.0 0.12134432813715873 … 0.1213443281371586 0.0; … ; 0.0 0.12134432813715873 … 0.1213443281371586 0.0; 0.0 0.12134432813715873 … 0.1213443281371586 0.0;;; 0.0 0.0 … 0.0 0.0; 0.14892258453196755 0.14892258453196755 … 0.14892258453196755 0.14892258453196755; … ; 0.14892258453196738 0.14892258453196738 … 0.14892258453196738 0.14892258453196738; 0.0 0.0 … 0.0 0.0]
- [3.0478431718176133 3.0478158588958384 … 3.047934407132488 3.0478829076399707; 3.0478921742796787 3.0478615839692695 … 3.0479950350866707 3.0479368431642384; … ; 3.0477574497062734 3.04773545592171 … 3.0478300382484087 3.047789226504652; 3.047797767524695 3.0477733366890103 … 3.047878867861117 3.047833184325156;;; 2.567054744858359 2.5670562676074793 … 2.567049778296592 2.567052560054736; 2.567051711744317 2.56705334622074 … 2.5670463664110166 2.5670493630392817; … ; 2.567060148333675 2.567061482264857 … 2.567055819529447 2.567058240137795; 2.567057591432184 2.567059013089459 … 2.567052966605906 2.567055554756332]</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../reaction_diffusion/">« GPU-Accelerated Stochastic Partial Differential Equations</a><a class="docs-footer-nextpage" href="../../manual/ensemblegpukernel/">EnsembleGPUKernel »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.1 on <span class="colophon-date" title="Friday 20 October 2023 03:15">Friday 20 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+ [3.0478431718205936 3.0478158588988173 … 3.0479344071354673 3.0478829076429497; 3.0478921742826572 3.047861583972248 … 3.0479950350896505 3.0479368431672165; … ; 3.047757449709251 3.0477354559246868 … 3.0478300382513863 3.04778922650763; 3.0477977675276757 3.047773336691987 … 3.0478788678640973 3.0478331843281357;;; 2.567054744855225 2.5670562676043445 … 2.567049778293458 2.5670525600516014; 2.56705171174118 2.5670533462176053 … 2.5670463664078818 2.5670493630361464; … ; 2.5670601483305377 2.5670614822617197 … 2.5670558195263085 2.5670582401346573; 2.5670575914290477 2.5670590130863213 … 2.5670529666027693 2.5670555547531957]</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../reaction_diffusion/">« GPU-Accelerated Stochastic Partial Differential Equations</a><a class="docs-footer-nextpage" href="../../manual/ensemblegpukernel/">EnsembleGPUKernel »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.2 on <span class="colophon-date" title="Thursday 26 October 2023 20:44">Thursday 26 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>