Repository for handling scripts and scratches for GEOFRAME/OMS3 project

Next steps for the project are:

• Create a script to run compilation, project directory structure generation and simfiles
• Test the script thorougfully
• [] Think about the implementation of some FORTRAN code, starting from the links provided:
  1. https://alm.engr.colostate.edu/cb/wiki/16993
  2. https://alm.engr.colostate.edu/cb/wiki/17097
  3. https://alm.engr.colostate.edu/cb/wiki/17105#section-OMS3_2FFortran9x+Integration+Example_
  4. https://teamwork.niwa.co.nz/display/IFM/Implementing+a+FORTRAN+model+in+OMS3 > see sparrow example
• [] Think about the needed JAVA classes for the Richards integration code from Casulli et al.
• Test OMS3 and R integration
• [] Port the Gumbel code in an OMS3 module through R

Should I take a look at some FORTRAN components that we already want to integrate inside the GEOFRAME?

• [HydroGen] (https://github.com/geoframecomponents/Hydro_gen), a computer code for generating two-dimensional space random functions with an assigned covariance structure. The original code is written in Ansi Fortran 77.
• ...

Links

• [Markdown syntax] (https://guides.github.com/features/mastering-markdown/)
• GEOFrame source code
• GEOFrame projects
• Last Renjin doclink seen

Trivia

• This has been a pain... REMEMBER to include the base class path inside the -classpath during JAVA program execution! e.g.: java -classpath .:../lib/renjin-script-engine-0.8.2165-jar-with-dependencies.jar TryRenjin . obviously stands for "this dir", so the commant above assumes you're executing the code inside the class directory.
• THE BIGGEST PAINSOURCE OF ALL: for some reason, java does not interpret correctly ~ as $HOME. So, better use $HOME directly for scripting.
• Example of packaged program execution (also, nice use of dot notation for upwards directory navigation): java -classpath ./:../../../JAVA_BASE_CLASSES/renjin-script-engine-0.8.2165-jar-with-dependencies.jar example1.TryRenjin

Remember: five pushes a day keeps the doctor away