Fix regex pattern in AdaptivePlanningMode

core/src/main/kotlin/com/simiacryptus/cognotik/input/DocumentReader.kt

@@ -18,7 +18,7 @@ interface RenderableDocumentReader : DocumentReader {
     fun renderImage(pageIndex: Int, dpi: Float): BufferedImage
 }
 
-fun File.getReader(): DocumentReader = when {
+fun File.getDocumentReader(): DocumentReader = when {
     this.name.endsWith(".pdf", ignoreCase = true) -> PDFReader(this)
     this.name.endsWith(".docx", ignoreCase = true) -> DocxReader(this)
     this.name.endsWith(".doc", ignoreCase = true) -> DocReader(this)
@@ -32,4 +32,12 @@ fun File.getReader(): DocumentReader = when {
     this.name.endsWith(".htm", ignoreCase = true) -> HTMLReader(this)
     this.name.endsWith(".eml", ignoreCase = true) -> EmlReader(this)
     else -> TextReader(this)
+}
+
+fun File.isDocumentFile(): Boolean {
+    val supportedExtensions = listOf(
+        ".pdf", ".docx", ".doc", ".xlsx", ".xls", ".pptx", ".ppt",
+        ".odt", ".rtf", ".html", ".htm", ".eml", ".txt"
+    )
+    return supportedExtensions.any { this.name.endsWith(it, ignoreCase = true) }
 }

core/src/main/kotlin/com/simiacryptus/cognotik/input/EmlReader.kt

@@ -107,7 +107,7 @@ class EmlReader(file: File) : DocumentReader {
                 }
             }
             // Use the file extension to determine the appropriate reader
-            val attachmentReader = tempFile.getReader()
+            val attachmentReader = tempFile.getDocumentReader()
             attachmentReader.use {
                 val attachmentText = it.getText()
                 result.appendLine(attachmentText)

core/src/main/kotlin/com/simiacryptus/cognotik/util/FileSelectionUtils.kt

@@ -1,5 +1,6 @@
 package com.simiacryptus.cognotik.util
 
+import com.simiacryptus.cognotik.input.isDocumentFile
 import org.apache.commons.text.similarity.LevenshteinDistance
 import java.io.File
 import java.io.InputStream
@@ -18,7 +19,7 @@ fun filteredWalkAsciiTree(
     ): String {
         val sb = StringBuilder()
         val filterFn = if (treatDocumentsAsText) {
-            { file: File -> fn(file) && isDocumentFile(file) }
+            { file: File -> fn(file) && file.isDocumentFile() }
         } else fn
         if (!filterFn(rootFile)) {
             log.debug("Skipping root file for tree: ${rootFile.absolutePath}")
@@ -77,7 +78,7 @@ fun filteredWalkAsciiTree(
         fn: (File) -> Boolean = { !isLLMIgnored(it.toPath()) }
     ): List<File> {
         val filterFn = if (treatDocumentsAsText) {
-            { f: File -> fn(f) || isDocumentFile(f) }
+            { f: File -> fn(f) || f.isDocumentFile() }
         } else fn
         val result = mutableListOf<File>()
         if (filterFn(file)) {
@@ -115,7 +116,7 @@ fun filteredWalkAsciiTree(
             }
             (when {
                 it.name.endsWith(".data") -> arrayOf(it)
-                treatDocumentsAsText && isDocumentFile(it) -> arrayOf(it)
+                treatDocumentsAsText && it.isDocumentFile() -> arrayOf(it)
                 isGitignore(it.toPath()) -> {
                     log.debug("File ignored by gitignore: ${it.absolutePath}")
                     arrayOf()
@@ -156,7 +157,7 @@ fun filteredWalkAsciiTree(
             !file.exists() -> false
             file.isDirectory -> false
             file.name.endsWith(".data") -> true
-            treatDocumentsAsText && isDocumentFile(file) -> true
+            treatDocumentsAsText && file.isDocumentFile() -> true
             file.length() > 100_000_000L -> false // 100MB limit
             isGitignore(file.toPath()) -> false
             isLLMIgnored(file.toPath()) -> false
@@ -384,11 +385,6 @@ fun filteredWalkAsciiTree(
         this
     }
 
-    fun isDocumentFile(file: File): Boolean {
-        val extension = file.extension.lowercase(Locale.getDefault())
-        return extension in setOf("pdf", "html", "htm")
-    }
-
     fun resolveToRelativePath(root: Path, filename: String): String? {
         log.debug("Resolving filename '{}' relative to root '{}'", filename, root)
         if (!root.toFile().exists() || !root.toFile().isDirectory) {

desktop/src/main/resources/welcome/welcome.html

@@ -246,6 +246,7 @@ <h3>Step 2: Configure Settings</h3>
         <div style="display: flex; gap: 10px;">
             <input id="working-dir" style="flex-grow: 1;" type="text" value=".">
             <button class="button secondary" id="generate-working-dir">New Directory</button>
+            <!--<button class="button secondary" id="select-working-dir">Select Directory</button>-->
         </div>
     </div>
     <div class="form-group">

desktop/src/main/resources/welcome/welcome.js

@@ -402,13 +402,32 @@ function setupWizardNavigation() {
             tempValue.textContent = this.value;
         });
     }
-    // Setup working directory generator
+// Setup working directory generator
     document.getElementById('generate-working-dir')?.addEventListener('click', () => {
         const workingDirInput = document.getElementById('working-dir');
         if (workingDirInput) {
             workingDirInput.value = Utils.generateCognotikWorkingDir();
         }
     });
+    // Setup working directory selector
+    // document.getElementById('select-working-dir')?.addEventListener('click', () => {
+    //     const workingDirInput = document.getElementById('working-dir');
+    //     if (workingDirInput) {
+    //         // Create a file input element to trigger directory selection
+    //         const fileInput = document.createElement('input');
+    //         fileInput.type = 'file';
+    //         fileInput.webkitdirectory = true;
+    //         fileInput.directory = true;
+    //         fileInput.addEventListener('change', (e) => {
+    //             if (e.target.files && e.target.files.length > 0) {
+    //                 // Get the path from the first file's webkitRelativePath
+    //                 const firstFilePath = e.target.files[0].webkitRelativePath;
+    //                 workingDirInput.value = firstFilePath;
+    //             }
+    //         });
+    //         fileInput.click();
+    //     }
+    // });
 
     // Next buttons
     document.getElementById('next-to-task-settings')?.addEventListener('click', () => {

gradle.properties

@@ -1,7 +1,7 @@
 pluginName=Cognotik
 pluginRepositoryUrl=https://github.com/SimiaCryptus/Cognotik
 libraryGroup=com.simiacryptus
-libraryVersion=2.0.26
+libraryVersion=2.0.27
 
 gradleVersion=8.13
 org.gradle.caching=true

intellij/src/main/kotlin/cognotik/actions/agent/CustomFileSetPatchServer.kt

@@ -4,7 +4,7 @@ import com.simiacryptus.cognotik.agents.ChatAgent
 import com.simiacryptus.cognotik.apps.general.renderMarkdown
 import com.simiacryptus.cognotik.config.AppSettingsState
 import com.simiacryptus.cognotik.diff.PatchProcessor
-import com.simiacryptus.cognotik.input.getReader
+import com.simiacryptus.cognotik.input.getDocumentReader
 import com.simiacryptus.cognotik.models.ModelSchema
 import com.simiacryptus.cognotik.platform.Session
 import com.simiacryptus.cognotik.platform.model.User
@@ -671,7 +671,7 @@ class CustomFileSetPatchServer(
                     ignoreCase = true
                 ) || file.name.endsWith(".htm", ignoreCase = true) -> {
                     try {
-                        file.getReader().use { reader ->
+                        file.getDocumentReader().use { reader ->
                             reader.getText()
                         }
                     } catch (e: Exception) {

intellij/src/main/kotlin/cognotik/actions/chat/MultiCodeChatAction.kt

@@ -10,7 +10,7 @@ import com.simiacryptus.cognotik.CognotikAppServer
 import com.simiacryptus.cognotik.apps.general.renderMarkdown
 import com.simiacryptus.cognotik.chat.model.ChatInterface
 import com.simiacryptus.cognotik.config.AppSettingsState
-import com.simiacryptus.cognotik.input.getReader
+import com.simiacryptus.cognotik.input.getDocumentReader
 import com.simiacryptus.cognotik.models.ModelSchema
 import com.simiacryptus.cognotik.platform.ApplicationServices
 import com.simiacryptus.cognotik.platform.Session
@@ -231,7 +231,7 @@ class MultiCodeChatAction : BaseAction() {
 
         fun readFileContent(file: File): String {
             return try {
-                file.getReader().use { reader ->
+                file.getDocumentReader().use { reader ->
                     reader.getText()
                 }
             } catch (e: Exception) {