update actions

SingleR-inc · Dec 8, 2024 · 14c0bd2 · 14c0bd2
1 parent 937d1af
commit 14c0bd2
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Showing 2 changed files with 13 additions and 10 deletions.
diff --git a/.github/workflows/build-docs.yml b/.github/workflows/build-docs.yml
@@ -24,12 +24,15 @@ jobs:
       - name: Install Python dependencies
         run: |
           python -m pip install --upgrade pip setuptools
-          pip install cmake pybind11 numpy tox
+          DEPENDENCIES=$(python -c 'from setuptools.config.setupcfg import read_configuration as c; a = c("setup.cfg"); print(" ".join(a["options"]["install_requires"][1:]))')
+          pip install ${DEPENDENCIES}
+          DOCDEPENDENCIES=$(python -c 'with open("docs/requirements.txt") as a: available = list(a); print(" ".join(map(lambda x : x.strip(), filter(lambda x : not x.startswith("#"), available))))')
+          pip install ${DOCDEPENDENCIES}
 
       - name: Build docs
         run: |
           python setup.py build_ext --inplace
-          cp build/lib*/rds2py/lib_rds_parser* src/rds2py/
+          cp build/lib*/_core* src/singler/
           tox -e docs
           touch ./docs/_build/html/.nojekyll
 

diff --git a/.github/workflows/pypi-publish.yml b/.github/workflows/pypi-publish.yml
@@ -11,13 +11,13 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Build wheels
         uses: pypa/[email protected]
         env:
           CIBW_ARCHS: x86_64
-          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.8"
+          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.9"
           CIBW_MANYLINUX_X86_64_IMAGE: ghcr.io/artifactdb/prebuilt-hdf5/manylinux_x86_64:0.0.4
           CIBW_MUSLLINUX_X86_64_IMAGE: ghcr.io/artifactdb/prebuilt-hdf5/musllinux_x86_64:0.0.4
           CIBW_SKIP: pp*
@@ -31,7 +31,7 @@ jobs:
     runs-on: macos-13
     steps:
       - name: Check out repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Grab prebuilt dependencies
         run: |
@@ -42,7 +42,7 @@ jobs:
         uses: pypa/[email protected]
         env:
           CIBW_ARCHS: x86_64
-          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.8"
+          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.9"
           CIBW_ENVIRONMENT: "MORE_CMAKE_OPTIONS=\"-DCMAKE_INSTALL_PREFIX=$(pwd)/installed -DCMAKE_OSX_ARCHITECTURES=x86_64\""
           CIBW_BUILD_VERBOSITY: 3
           CIBW_SKIP: pp*
@@ -57,7 +57,7 @@ jobs:
     runs-on: macos-13
     steps:
       - name: Check out repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Grab prebuilt dependencies
         run: |
@@ -68,7 +68,7 @@ jobs:
         uses: pypa/[email protected]
         env:
           CIBW_ARCHS: arm64
-          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.8"
+          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.9"
           CIBW_ENVIRONMENT: "MORE_CMAKE_OPTIONS=\"-DCMAKE_INSTALL_PREFIX=$(pwd)/installed -DCMAKE_OSX_ARCHITECTURES=arm64\""
           CIBW_BUILD_VERBOSITY: 3
           MACOSX_DEPLOYMENT_TARGET: 13.0
@@ -82,7 +82,7 @@ jobs:
 #    runs-on: windows-2019
 #    steps:
 #      - name: Check out repository
-#        uses: actions/checkout@v3
+#        uses: actions/checkout@v4
 #
 #      - name: Grab prebuilt dependencies
 #        run: |
@@ -100,7 +100,7 @@ jobs:
 #        uses: pypa/[email protected]
 #        env:
 #          CIBW_ARCHS: AMD64
-#          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.8"
+#          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.9"
 #          CIBW_ENVIRONMENT: "MORE_CMAKE_OPTIONS=\"-DCMAKE_INSTALL_PREFIX=${INSTALL_DIR}\" VERBOSE=1"
 #          CIBW_BEFORE_BUILD_WINDOWS: "pip install delvewheel"
 #          CIBW_REPAIR_WHEEL_COMMAND_WINDOWS: "delvewheel repair -w {dest_dir} {wheel}"