formatting changes

frontend/CHANGELOG.md

@@ -118,11 +118,11 @@
 
 1. FixedData cases' queries updated to correctly work with updated schemas
 2. New tables/cases added:
-   1. `personnelrole`
-   2. `sitespecificvalidations`
-   3. `roles`
-   4. `measurementssummary`
-   5. `viewfulltable`
+    1. `personnelrole`
+    2. `sitespecificvalidations`
+    3. `roles`
+    4. `measurementssummary`
+    5. `viewfulltable`
 
 ###### POST
 
@@ -142,18 +142,18 @@
 
 1. Postvalidation summary statistics calculation endpoint
 2. Statistics queries:
-   1. `number of records by quadrat`
-   2. `all stem records by quadrat (count only)`
-   3. `live stem records by quadrat (count only)`
-   4. `tree records by quadrat (count only)`
-   5. `number of dead or missing stems by census`
-   6. `trees outside of plot limits`
-   7. `stems with largest DBH/HOM measurements by species`
-   8. `all trees that were recorded in last census that are NOT in current census`
-   9. `number of new stems per quadrat per census`
-   10. `quadrats with most and least new stems per census`
-   11. `number of dead stems per quadrat per census`
-   12. `number of dead stems per species per census`
+    1. `number of records by quadrat`
+    2. `all stem records by quadrat (count only)`
+    3. `live stem records by quadrat (count only)`
+    4. `tree records by quadrat (count only)`
+    5. `number of dead or missing stems by census`
+    6. `trees outside of plot limits`
+    7. `stems with largest DBH/HOM measurements by species`
+    8. `all trees that were recorded in last census that are NOT in current census`
+    9. `number of new stems per quadrat per census`
+    10. `quadrats with most and least new stems per census`
+    11. `number of dead stems per quadrat per census`
+    12. `number of dead stems per species per census`
 
 #### frontend/app/api/refreshviews/[view]/[schema]/route.ts
 
@@ -220,7 +220,7 @@
 3. customized cell and edit cell rendering added
 4. some exceptions exist -- for instances where specific additional handling is needed, column states are directly
    defined in the datagrid components themselves.
-   1. `alltaxonomiesview` -- specieslimits column customized addition
+    1. `alltaxonomiesview` -- specieslimits column customized addition
 
 #### GitHub Feedback Modal
 
@@ -250,18 +250,18 @@
 1. The DataGridCommons generic datagrid instance has been replaced by the IsolatedDataGridCommons instance, which
    isolates as much information as possible to the generic instance rather than the existing DataGridCommons, which
    requires parameter drilling of all MUI X DataGrid parameters. Current datagrids using this new implementation are:
-   - `alltaxonomiesview`
-   - `attributes`
-   - `personnel`
-   - `quadratpersonnel`
-   - `quadrats`
-   - `roles`
-   - `stemtaxonomiesview`
+    - `alltaxonomiesview`
+    - `attributes`
+    - `personnel`
+    - `quadratpersonnel`
+    - `quadrats`
+    - `roles`
+    - `stemtaxonomiesview`
 2. found that attempting to use typescript runtime utilities to create "default" initial states for each RDS type was
    causing cascading failures. Due to the way that runtime utility functions work, no data was actually reaching the
    datagrids importing those initial states
-   1. replaced with manual definition of initial states -- planning on centralizing this to another place, similar to
-      the `datagridcolumns.tsx` file
+    1. replaced with manual definition of initial states -- planning on centralizing this to another place, similar to
+       the `datagridcolumns.tsx` file
 3. `measurementssummaryview` datagrid instance added as a replacement to the previously defined summary page
 
 #### Re-Entry Data Modal
@@ -312,12 +312,12 @@
 ### SQL Updates
 
 1. Schema has been been updated -- new tables added:
-   1. `roles` - outlines user roles
-   2. `specieslimits` - allows setting min/max bounds on measurements
-   3. `specimens` - recording specimen data (added on request by ForestGEO)
-   4. `unifiedchangelog` - partitioned table that tracks all changes to all tables in schema. All tables have triggers
-      that automatically update the `unifiedchangelog` on every change
-   5. `sitespecificvalidations` - for specific validations applicable only to the host site
+    1. `roles` - outlines user roles
+    2. `specieslimits` - allows setting min/max bounds on measurements
+    3. `specimens` - recording specimen data (added on request by ForestGEO)
+    4. `unifiedchangelog` - partitioned table that tracks all changes to all tables in schema. All tables have triggers
+       that automatically update the `unifiedchangelog` on every change
+    5. `sitespecificvalidations` - for specific validations applicable only to the host site
 2. validation stored procedures have been deprecated and removed, replaced with `validationprocedures` and
    `sitespecificvalidations` tables
 3. migration script set has been completed and tested

frontend/app/(hub)/measurementshub/validations/page.tsx

@@ -1,5 +1,5 @@
 'use client';
-import React, { useEffect, useState, useMemo } from 'react';
+import React, { useEffect, useMemo, useState } from 'react';
 import useSWR from 'swr';
 import { ValidationProceduresRDS } from '@/config/sqlrdsdefinitions/validations';
 import { useOrgCensusContext, usePlotContext, useSiteContext } from '@/app/contexts/userselectionprovider';

frontend/app/(login)/login/page.tsx

@@ -1,7 +1,7 @@
 'use client';
 import React, { useEffect, useState } from 'react';
 import { useSession } from 'next-auth/react';
-import { motion, AnimatePresence } from 'framer-motion';
+import { AnimatePresence, motion } from 'framer-motion';
 import styles from '@/styles/styles.module.css';
 import Box from '@mui/joy/Box';
 import UnauthenticatedSidebar from '@/components/unauthenticatedsidebar';

frontend/app/contexts/loadingprovider.tsx

@@ -1,6 +1,6 @@
 'use client';
 
-import React, { createContext, useContext, useEffect, useState, useRef } from 'react';
+import React, { createContext, useContext, useEffect, useRef, useState } from 'react';
 
 const LoadingContext = createContext<{
   isLoading: boolean;

frontend/components/client/rendergridexplanations.tsx

@@ -2,10 +2,10 @@
 
 import { DatagridType, HeadersByDatagridType } from '@/config/macros/formdetails';
 import {
-  AccordionGroup,
   Accordion,
-  AccordionSummary,
   AccordionDetails,
+  AccordionGroup,
+  AccordionSummary,
   Alert,
   Box,
   Card,

frontend/components/datagrids/applications/multiline/multilinemodal.tsx

@@ -1,6 +1,6 @@
 'use client';
 
-import { DialogTitle, IconButton, Modal, ModalDialog, Typography } from '@mui/joy';
+import { DialogTitle, IconButton, Modal, ModalDialog } from '@mui/joy';
 import CloseIcon from '@mui/icons-material/Close';
 import MultilineSpeciesDataGrid from '@/components/datagrids/applications/multiline/multilinespeciesdatagrid';
 import MultilineAttributesDataGrid from '@/components/datagrids/applications/multiline/multilineattributesdatagrid';

frontend/config/connectionmanager.ts

@@ -20,19 +20,6 @@ class ConnectionManager {
     return ConnectionManager.instance;
   }
 
-  // Acquire a connection for the current operation
-  private async acquireConnectionInternal(): Promise<PoolConnection> {
-    try {
-      const connection = await getConn(); // Reuse getConn from processormacros
-      await connection.ping(); // Validate connection
-      // console.log(chalk.green('Connection validated.'));
-      return connection;
-    } catch (error) {
-      console.error(chalk.red('Error acquiring or validating connection:', error));
-      throw error;
-    }
-  }
-
   // Execute a query using the acquired connection
   public async executeQuery(query: string, params?: any[], transactionId?: string): Promise<any> {
     const connection = transactionId ? this.transactionConnections.get(transactionId) : await this.acquireConnectionInternal();
@@ -116,6 +103,19 @@ class ConnectionManager {
   public async closeConnection(): Promise<void> {
     // console.warn(chalk.yellow('Warning: closeConnection is deprecated for concurrency. Connections are managed dynamically and do not persist.'));
   }
+
+  // Acquire a connection for the current operation
+  private async acquireConnectionInternal(): Promise<PoolConnection> {
+    try {
+      const connection = await getConn(); // Reuse getConn from processormacros
+      await connection.ping(); // Validate connection
+      // console.log(chalk.green('Connection validated.'));
+      return connection;
+    } catch (error) {
+      console.error(chalk.red('Error acquiring or validating connection:', error));
+      throw error;
+    }
+  }
 }
 
 export default ConnectionManager;

frontend/config/datagridhelpers.ts

@@ -7,7 +7,7 @@ import { getAllTaxonomiesViewHCs, getAllViewFullTableViewsHCs, getMeasurementsSu
 import { getPersonnelHCs } from '@/config/sqlrdsdefinitions/personnel';
 import { getCoreMeasurementsHCs } from '@/config/sqlrdsdefinitions/core';
 import { GridColDef, GridFilterModel, GridRowId, GridRowModel, GridRowModesModel, GridRowsProp, GridSortDirection } from '@mui/x-data-grid';
-import { Dispatch, MutableRefObject, RefObject, SetStateAction } from 'react';
+import { Dispatch, RefObject, SetStateAction } from 'react';
 import { AlertProps } from '@mui/material';
 import styled from '@emotion/styled';
 import { getSpeciesLimitsHCs } from '@/config/sqlrdsdefinitions/taxonomies';
@@ -172,6 +172,7 @@ export function getGridID(gridType: string): string {
 }
 
 type VisibleFilter = 'valid' | 'errors' | 'pending';
+
 interface ExtendedGridFilterModel extends GridFilterModel {
   visible: VisibleFilter[];
 }
@@ -243,6 +244,7 @@ export interface PendingAction {
   actionType: 'save' | 'delete' | '';
   actionId: GridRowId | null;
 }
+
 export const CellItemContainer = styled('div')({
   display: 'flex',
   flexDirection: 'column',

frontend/config/macros.ts

@@ -103,6 +103,7 @@ export const booleanToBit = (value: boolean | undefined): number => (value ? 1 :
 
 export const unitSelectionOptions = ['km', 'hm', 'dam', 'm', 'dm', 'cm', 'mm'];
 export const areaSelectionOptions = ['km2', 'hm2', 'dam2', 'm2', 'dm2', 'cm2', 'mm2'];
+
 export interface UnifiedValidityFlags {
   attributes: boolean;
   personnel: boolean;
@@ -137,6 +138,7 @@ export interface FileMapping {
   columnMappings: Record<string, string>;
   specialProcessing?: (props: Readonly<SpecialProcessingProps>) => Promise<void>;
 }
+
 // Define the mappings for each file type
 export const fileMappings: Record<string, FileMapping> = {
   attributes: {
@@ -192,6 +194,7 @@ export const fileMappings: Record<string, FileMapping> = {
     specialProcessing: processCensus
   }
 };
+
 export interface ValidationResponse {
   totalRows: number;
   failedRows: number;

frontend/config/macros/azurestorage.ts

@@ -32,6 +32,7 @@ const MAX_RETRIES = 3; // Maximum number of retries
 const RETRY_DELAY_MS = 3000; // Delay between retries in milliseconds
 
 export const FORMSEARCH_LIMIT = 5;
+
 export interface FileRowErrors {
   stemtag: string;
   tag: string;

frontend/config/macros/siteconfigs.ts

@@ -26,6 +26,7 @@ export interface SiteConfigProps {
     icon: React.ElementType;
   }[];
 }
+
 export const siteConfig = {
   name: 'ForestGEO',
   description: 'Census data entry and storage',

frontend/config/poolmonitor.ts

@@ -55,6 +55,10 @@ export class PoolMonitor {
     }
   }
 
+  public isPoolClosed(): boolean {
+    return this.poolClosed;
+  }
+
   private async reinitializePool(): Promise<void> {
     if (this.reinitializing) return; // Prevent concurrent reinitialization
     this.reinitializing = true;
@@ -151,8 +155,4 @@ export class PoolMonitor {
       }
     }, 10000); // Poll every 10 seconds
   }
-
-  public isPoolClosed(): boolean {
-    return this.poolClosed;
-  }
 }

frontend/config/sqlrdsdefinitions/core.ts

@@ -71,6 +71,7 @@ export interface CMAttributesRDS {
   coreMeasurementID?: number;
   code?: string;
 }
+
 export type CMAttributesResult = ResultType<CMAttributesRDS>;
 
 export interface CMAttributesStagingRDS {
@@ -81,12 +82,14 @@ export interface CMAttributesStagingRDS {
 }
 
 export type CMAttributesStagingResult = ResultType<CMAttributesStagingRDS>;
+
 export interface CMVErrorRDS {
   id?: number;
   cmvErrorID?: number;
   coreMeasurementID?: number;
   validationErrorID?: number;
 }
+
 export type CMVErrorResult = ResultType<CMVErrorRDS>;
 const ATTRIBUTES_CODE_LIMIT = 10;
 export const validateAttributesRow: ValidationFunction = (row: FileRow) => {
@@ -106,16 +109,19 @@ export const validateAttributesRow: ValidationFunction = (row: FileRow) => {
 
   return Object.keys(errors).length > 0 ? errors : null;
 };
+
 export interface AttributesRDS {
   id?: number;
   code?: string;
   description?: string;
   status?: string;
 }
+
 export type AttributesResult = ResultType<AttributesRDS>;
 export const initialAttributesRDSRow = createInitialObject<AttributesRDS>();
 export const AttributeStatusOptions = ['alive', 'alive-not measured', 'dead', 'missing', 'broken below', 'stem dead'];
 export const attributesFields = ['code', 'description', 'status'];
+
 export interface UnifiedChangelogRDS {
   id?: number;
   changeID?: number;
@@ -129,4 +135,5 @@ export interface UnifiedChangelogRDS {
   plotID?: number;
   censusID?: number;
 }
+
 export type UnifiedChangelogResult = ResultType<UnifiedChangelogRDS>;

frontend/config/sqlrdsdefinitions/personnel.ts

@@ -10,6 +10,7 @@ export interface PersonnelRDS {
   lastName?: string;
   roleID?: number;
 }
+
 export type PersonnelResult = ResultType<PersonnelRDS>;
 // personnel table column character limits
 const PERSONNEL_FIRSTNAME_LIMIT = 50;
@@ -47,10 +48,12 @@ export interface QuadratPersonnelRDS {
 }
 
 export type QuadratPersonnelResult = ResultType<QuadratPersonnelRDS>;
+
 export interface RoleRDS {
   id?: number;
   roleID?: number;
   roleName?: string;
   roleDescription?: string;
 }
+
 export type RoleResult = ResultType<RoleRDS>;