updated pkgdown site

* some weird behaviour with the mimR example not finding a variable declared in the example!
StatisticsHealthEconomics · Feb 13, 2024 · cf5a892 · cf5a892
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -18,7 +18,7 @@ Description:
 License: GPL (>= 3)
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.2.3.9000
+RoxygenNote: 7.3.1
 Imports:
     boot,
     copula,

diff --git a/R/mimR.R b/R/mimR.R
@@ -23,28 +23,29 @@
 #' 
 #' @export
 #' @examples
-#' 
 #' data(AC_IPD)  # AC patient-level data
 #' data(BC_ALD)  # BC aggregate-level data
 #' 
+#' lin_form <- as.formula("y ~ X3 + X4 + trt*X1 + trt*X2")
+#' 
 #' # matching-adjusted indirect comparison
-#' mimR_maic <- mimR(AC_IPD, BC_ALD, strategy = strategy_maic())
+#' mimR_maic <- mimR(AC_IPD, BC_ALD, strategy = strategy_maic(lin_form))
 #' 
 #' # simulated treatment comparison
-#' mimR_stc <- mimR(AC_IPD, BC_ALD, strategy = strategy_stc())
+#' mimR_stc <- mimR(AC_IPD, BC_ALD, strategy = strategy_stc(lin_form))
 #' 
 #' # G-computation with maximum likelihood
-#' # mimR_gcomp_ml <- mimR(AC_IPD, BC_ALD, strategy = strategy_gcomp_ml())
+#' # mimR_gcomp_ml <- mimR(AC_IPD, BC_ALD, strategy = strategy_gcomp_ml(lin_form))
 #' 
 #' # G-computation with Bayesian inference
-#' mimR_gcomp_stan <- mimR(AC_IPD, BC_ALD, strategy = strategy_gcomp_stan())
+#' mimR_gcomp_stan <- mimR(AC_IPD, BC_ALD, strategy = strategy_gcomp_stan(lin_form))
 #' 
 mimR <- function(AC.IPD, BC.ALD, strategy, CI = 0.95, ...) {
 
   if (CI <= 0 || CI >= 1) stop("CI argument must be between 0 and 1.")
   ##TODO: as method instead?
   if (!inherits(strategy, "strategy"))
-    stop("strategy argument must be of a class strategy.")
+    stop("strategy argument must be a class strategy.")
 
   # select data according to formula
   ipd <- model.frame(strategy$formula, data = AC.IPD)
@@ -64,7 +65,6 @@ mimR <- function(AC.IPD, BC.ALD, strategy, CI = 0.95, ...) {
 
   keep_names <- c(term_names, response_names)
 
-  browser()
   ald <- BC.ALD[keep_names]
 
   AC_mimR <- IPD_stats(strategy, ipd = ipd, ald = ald, ...) 

diff --git a/README.md b/README.md
@@ -1,4 +1,6 @@
-# mimR: Multiple Imputation Marginalisation <img align="right" src="mime.png" width="100">
+# mimR: Multiple Imputation Marginalisation 
+
+<!-- <img align="right" src="mime.png" width="100"> -->
 
 <!-- badges: start -->
 

diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -30,4 +30,8 @@ reference:
   - marginal_variance
   - trial_treatment_effect
   - trial_variance
+- title: "Data"
+  contents:
+  - AC_IPD
+  - BC_ALD
 
diff --git a/docs/articles/Basic_example.html b/docs/articles/Basic_example.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -3,7 +3,7 @@ pkgdown: 2.0.7
 pkgdown_sha: ~
 articles:
   Basic_example: Basic_example.html
-last_built: 2023-12-15T10:45Z
+last_built: 2024-02-13T17:08Z
 urls:
   reference: https://StatisticsHealthEconomics.github.io/mimR/reference
   article: https://StatisticsHealthEconomics.github.io/mimR/articles

diff --git a/docs/reference/AC_IPD.html b/docs/reference/AC_IPD.html
diff --git a/docs/reference/ALD_stats.html b/docs/reference/ALD_stats.html