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@SynBioDex

Synthetic Biology Data Exchange Group

A group to coordinate the development of standards to facilitate data exchange in synthetic biology
README.md

Synthetic Biology Data Exchange Group

A group to coordinate the development of standards to facilitate data exchange in synthetic biology

As well as several software projects, this organization includes respositories containing information about the SBOL/SBOL Visual standards and their development.

SbolStandardWebsite is the repo from which http://www.sbolstandard.org/ is generated.

A summary of recent activity on the specification (rather than software) repos within the SynBioDex organization is generated by SynBioDex/activity-summaries and accessible at: https://synbiodex.github.io/activity-summaries/

SBOL

  • SBOL-specification: the SBOL Standard
  • SEPs: SBOL Enhancement Proposals - proposals for changes to the SBOL standard

SBOL Visual

SBOL and SBOL Visual

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  1. SBOL-specification SBOL-specification Public

    The Synthetic Biology Open Language (SBOL)

    TeX 15 9

  2. SBOL-visual SBOL-visual Public

    The reference implementation of the SBOL Visual standard

    HTML 33 16

  3. pySBOL3 pySBOL3 Public

    Native python implementation of SBOL 3.0 specification

    Python 37 16

  4. sboljs3 sboljs3 Public

    A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js

    TypeScript 5 1

  5. SBOL-utilities SBOL-utilities Public

    Command-line utilities and scripts for manipulating SBOL data

    JavaScript 15 21

  6. SBOL-examples SBOL-examples Public

    A repository to share/discuss/ask/propose how to represent examples using SBOL and SBOLVisual.

    Jupyter Notebook 3 4

Repositories

Showing 10 of 55 repositories
  • Community-Media Public

    This repository is intended to be a "one stop" location for finding all of the publicly presented papers, posters, and talks that have been given on SBOL.

    SynBioDex/Community-Media’s past year of commit activity
    Jupyter Notebook 9 CC0-1.0 13 3 0 Updated Nov 4, 2024
  • Xperimental-Data-Connector Public Forked from SynBioDex/Excel-to-SBOL

    XDC uses excel2flapjack and excel2sbol and interlinks the data

    SynBioDex/Xperimental-Data-Connector’s past year of commit activity
    Python 2 BSD-3-Clause 8 6 0 Updated Oct 31, 2024
  • SBOLCanvas Public
    SynBioDex/SBOLCanvas’s past year of commit activity
    HTML 12 Apache-2.0 6 26 0 Updated Oct 30, 2024
  • SBOL-Notebooks Public

    A repository containing Jupyter Notebooks for SBOL

    SynBioDex/SBOL-Notebooks’s past year of commit activity
    Jupyter Notebook 0 0 17 4 Updated Oct 30, 2024
  • SBOL-Validator Public

    A web application to validate SBOL files

    SynBioDex/SBOL-Validator’s past year of commit activity
    HTML 8 Apache-2.0 3 15 1 Updated Oct 26, 2024
  • Excel-utilities Public
    SynBioDex/Excel-utilities’s past year of commit activity
    Python 1 BSD-3-Clause 0 5 1 Updated Oct 25, 2024
  • Xperimental-Data-Connector-Server Public Forked from SynBioHub/Submit-Testing

    This runs a submission to flapjack and synbiohub from an excel file

    SynBioDex/Xperimental-Data-Connector-Server’s past year of commit activity
    HTML 0 BSD-3-Clause 2 3 1 Updated Oct 24, 2024
  • pySBOL2 Public

    A pure Python implementation of the SBOL standard.

    SynBioDex/pySBOL2’s past year of commit activity
    Python 21 Apache-2.0 7 29 1 Updated Oct 17, 2024
  • SBOLExplorer Public
    SynBioDex/SBOLExplorer’s past year of commit activity
    UnrealScript 4 MIT 2 20 7 Updated Sep 25, 2024
  • SbolStandardWebsite Public
    SynBioDex/SbolStandardWebsite’s past year of commit activity
    TeX 4 CC0-1.0 3 11 0 Updated Sep 23, 2024
View all repositories

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