Merge pull request #825 from KrisThielemans/Gadgetron-fixes #589
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: run superbuild and test | |
| on: | |
| push: | |
| branches: [ master ] | |
| paths-ignore: | |
| - 'docker/Dockerfile' | |
| - 'docker/*yml' | |
| - '**.md' | |
| - 'jupyterhub/**' | |
| - 'VirtualBox/**' | |
| - '.github/workflows/*docker*' | |
| - 'CITATION.cff' | |
| - '.mailmap' | |
| pull_request: | |
| branches: [ master ] | |
| paths-ignore: | |
| - 'docker/Dockerfile' | |
| - 'docker/*yml' | |
| - '**.md' | |
| - 'jupyterhub/**' | |
| - 'VirtualBox/**' | |
| - '.github/workflows/*docker*' | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| compiler: gcc | |
| compiler_version: 9 | |
| BUILD_TYPE: "Release" | |
| EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=ON -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON" | |
| DEVEL_BUILD: "OFF" | |
| - os: ubuntu-latest | |
| compiler: gcc | |
| compiler_version: 9 | |
| BUILD_TYPE: "Release" | |
| EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=ON -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=OFF -DUSE_SYSTEM_HDF5=OFF -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=OFF" | |
| DEVEL_BUILD: "OFF" | |
| #- os: ubuntu-latest | |
| # compiler: gcc | |
| # compiler_version: 9 | |
| # BUILD_TYPE: "Release" | |
| # EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=ON -DUSE_SYSTEM_Boost=OFF -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON" | |
| # DEVEL_BUILD: "OFF" | |
| - os: ubuntu-latest | |
| compiler: gcc | |
| compiler_version: 9 | |
| BUILD_TYPE: "Release" | |
| EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=ON -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON -DUSE_SYSTEM_GTest=OFF" | |
| DEVEL_BUILD: "OFF" | |
| - os: ubuntu-latest | |
| compiler: gcc | |
| compiler_version: 11 | |
| BUILD_TYPE: "Release" | |
| EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=OFF -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON -DUSE_ROOT:BOOL=ON" | |
| DEVEL_BUILD: "ON" | |
| - os: ubuntu-latest | |
| compiler: gcc | |
| compiler_version: 11 | |
| BUILD_TYPE: "Release" | |
| EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=OFF -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON -DUSE_ROOT:BOOL=ON" | |
| DEVEL_BUILD: "OFF" | |
| # let's run all of them, as opposed to aborting when one fails | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: disk space | |
| shell: bash | |
| run: | | |
| case ${{matrix.os}} in | |
| (ubuntu* | macOS*) | |
| sudo .github/workflows/GHA_increase_disk_space.sh | |
| ;; | |
| (windows*) | |
| # no idea what to do here | |
| ;; | |
| esac | |
| - name: install_dependencies | |
| run: | |
| cd docker; | |
| sudo bash raw-ubuntu.sh; | |
| sudo bash build_essential-ubuntu.sh; | |
| sudo bash build_python-ubuntu.sh; | |
| sudo bash build_gadgetron-ubuntu.sh; | |
| sudo bash build_system-ubuntu.sh; | |
| PYTHON_EXECUTABLE=python3 PYTHON_INSTALL_DIR=~/virtualenv bash user_python-ubuntu.sh; | |
| - name: ccache | |
| uses: hendrikmuhs/[email protected] | |
| with: | |
| key: ${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.compiler_version }}-${{ matrix.BUILD_TYPE }} | |
| max-size: "900M" | |
| - name: set_compiler_variables | |
| shell: bash | |
| run: | | |
| set -ex | |
| if test 'XX${{ matrix.compiler }}' = 'XXclang'; then | |
| CC="clang" | |
| CXX="clang++" | |
| elif test 'XX${{ matrix.compiler }}' = 'XXgcc'; then | |
| CC="gcc" | |
| CXX="g++" | |
| fi | |
| if test 'XX${{ matrix.compiler_version }}' != 'XX'; then | |
| CC=${CC}-${{ matrix.compiler_version }} | |
| CXX=${CXX}-${{ matrix.compiler_version }} | |
| sudo apt install -yq ${CXX} ${CC} | |
| fi | |
| export CC CXX | |
| # make available to jobs below | |
| echo CC="$CC" >> $GITHUB_ENV | |
| echo CXX="$CXX" >> $GITHUB_ENV | |
| - name: configure | |
| shell: bash | |
| env: | |
| EXTRA_BUILD_FLAGS: ${{ matrix.EXTRA_BUILD_FLAGS }} | |
| CMAKE_BUILD_TYPE: ${{ matrix.CMAKE_BUILD_TYPE }} | |
| DEVEL_BUILD: "-DDEVEL_BUILD=${{ matrix.DEVEL_BUILD }}" | |
| run: | | |
| set -ex; | |
| export PATH="/usr/lib/ccache:/usr/local/opt/ccache/libexec:$PATH" | |
| export superbuild=`pwd`; | |
| export BUILD_FLAGS="-DCMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE} -DCMAKE_INSTALL_PREFIX=~/install -DPYVER=3 -DUSE_SYSTEM_RocksDB=OFF -DBUILD_TESTING_Gadgetron:BOOL=ON"; | |
| mkdir -p build/; | |
| cd build; | |
| source ~/virtualenv/bin/activate; | |
| cmake -S ${GITHUB_WORKSPACE} ${BUILD_FLAGS} ${EXTRA_BUILD_FLAGS} ${DEVEL_BUILD}; | |
| - name: build | |
| shell: bash | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/build; | |
| source ~/virtualenv/bin/activate; | |
| cmake --build . -j 2; | |
| # Enable tmate debugging of manually-triggered workflows if the input option was provided | |
| - name: Setup tmate session if triggered | |
| uses: mxschmitt/action-tmate@v3 | |
| timeout-minutes: 15 | |
| if: ${{ github.event_name == 'workflow_dispatch' && github.event.inputs.debug_enabled }} | |
| - name: Upload build log files for debugging | |
| uses: actions/upload-artifact@v3 | |
| if: failure() | |
| with: | |
| name: build_log_files-${{ matrix.os }}-${{ matrix.compiler }}${{ matrix.compiler_version }}-${{ matrix.BUILD_TYPE }}-DEVEL=${{ matrix.DEVEL_BUILD }}-run=${{ github.run_number }}-id=${{ github.run_id }} | |
| path: ${{ github.workspace }}/build/**/*.log | |
| retention-days: 7 | |
| - name: tests | |
| shell: bash | |
| run: | |
| bash docker/ctest_sirf.sh |