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fix: GPR curation for transport reactions (8) #958

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merged 3 commits into from
Jan 13, 2025
Merged

fix: GPR curation for transport reactions (8) #958

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5948d30
fix: GPR curation for transport reactions (8)
JHL-452b Dec 31, 2024
3f06a62
chore: add macaw test result
JHL-452b Dec 31, 2024
2f85a64
Merge branch 'develop' into Fix-Transport_reactions_8
feiranl Jan 13, 2025
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61 changes: 23 additions & 38 deletions model/Human-GEM.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -154975,7 +154975,7 @@
- MAM02519e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -154992,7 +154992,7 @@
- MAM02519e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155264,7 +155264,7 @@
- MAM02896e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000105281 or ENSG00000115902"
- gene_reaction_rule: "ENSG00000105281 or ENSG00000115902"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155298,7 +155298,7 @@
- MAM02896e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155332,7 +155332,7 @@
- MAM02896e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -155349,7 +155349,7 @@
- MAM03101e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155400,7 +155400,7 @@
- MAM02896e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -155417,7 +155417,7 @@
- MAM02896e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000105281"
- gene_reaction_rule: "ENSG00000105281"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -155434,7 +155434,7 @@
- MAM03135e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -155451,7 +155451,7 @@
- MAM02993e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000105281 or ENSG00000115902"
- gene_reaction_rule: "ENSG00000105281 or ENSG00000115902"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -155468,7 +155468,7 @@
- MAM02896e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155519,7 +155519,7 @@
- MAM02519e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155587,7 +155587,7 @@
- MAM02724e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155638,7 +155638,7 @@
- MAM02519e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -155655,7 +155655,7 @@
- MAM02770e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155689,7 +155689,7 @@
- MAM03135e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155723,7 +155723,7 @@
- MAM02519e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155825,7 +155825,7 @@
- MAM03089e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -155842,7 +155842,7 @@
- MAM03089e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -155859,7 +155859,7 @@
- MAM03101e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155927,7 +155927,7 @@
- MAM03089e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -155961,7 +155961,7 @@
- MAM03089e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
- gene_reaction_rule: "ENSG00000103257"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -156063,7 +156063,6 @@
- MAM02896e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -156080,7 +156079,6 @@
- MAM02724e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -156199,7 +156197,6 @@
- MAM03135e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -156216,7 +156213,6 @@
- MAM02993e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -156267,7 +156263,6 @@
- MAM03101e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -156284,7 +156279,6 @@
- MAM03101e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -156352,7 +156346,6 @@
- MAM03101e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -156403,7 +156396,6 @@
- MAM03101e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -156420,7 +156412,6 @@
- MAM03101e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -156454,7 +156445,6 @@
- MAM03135e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -156471,7 +156461,6 @@
- MAM03101e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -156488,7 +156477,6 @@
- MAM03101e: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -156624,7 +156612,6 @@
- MAM02724e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -156641,7 +156628,6 @@
- MAM03101e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down Expand Up @@ -156709,7 +156695,6 @@
- MAM03135e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand All @@ -156726,7 +156711,7 @@
- MAM02993e: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000103064 or ENSG00000105281 or ENSG00000115902 or ENSG00000151012"
- gene_reaction_rule: "ENSG00000105281 or ENSG00000115902"
- rxnFrom: "HMRdatabase"
- references: "PMID:14770309;PMID:14770310"
- subsystem:
Expand Down
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