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Add basic inofrmation
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Zhixu Ni committed Jul 23, 2021
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# StarCats
epilipidomics plugins for Lipostar developed by Team SysMedOs
## epilipidomics tools for Lipostar 2 developed by Team SysMedOs

This repository contains special version of epilipidomics tools which can be used with Lipostar 2 software.

+ ### LipidLynxX

![](./LipidLynxX/img/LipidLynxX_logo.png)

+ The LipidLynxX project is aimed to provide a unified identifier for major lipids, especially oxidized lipids in the epilipidome.
+ Project repository: https://github.com/SysMedOs/LipidLynxX
+ Publication: [Zhixu Ni, Maria Fedorova. "LipidLynxX: a data transfer hub to support integration of large scale lipidomics datasets"](https://www.sciencedirect.com/science/article/pii/S0891584919303466)
+ DOI: [10.1016/j.freeradbiomed.2019.04.027](https://www.sciencedirect.com/science/article/pii/S0891584919303466)

+ ### LPPtiger

![](./LPPtiger/img/LPPtiger_logo.png)

+ LPPtiger is a pioneer in the field of high-throughput identification of oxidized lipids (epilipids).
+ Project repository: https://github.com/SysMedOs/lpptiger
+ Publication: [Ni, Zhixu, Georgia Angelidou, Ralf Hoffmann, and Maria Fedorova. "LPPtiger software for lipidome-specific prediction and identification of oxidized phospholipids from LC-MS datasets." Scientific Reports 7, Article number: 15138 (2017).](https://www.nature.com/articles/s41598-017-15363-z)
+ DOI: [10.1038/s41598-017-15363-z](https://www.nature.com/articles/s41598-017-15363-z)

## About Lipostar 2

Lipostar is the latest software from Molecular Discovery, developed to assist LC/MS-based lipidomics from the very beginning (direct import of raw data files) to the final goal (lipid identification, statistical analysis, report generation).

+ Publication: [Goracci L; Tortorella S; Tiberi P; Pellegrino RM; Di Veroli A; Valeri A; Cruciani G, Lipostar, a Comprehensive Platform-Neutral Cheminformatics Tool for Lipidomics. Anal. Chem., 2017, 89 (11), pp 6257–6264](https://pubs.acs.org/doi/10.1021/acs.analchem.7b01259)
+ DOI: [10.1021/acs.analchem.7b01259](https://doi.org/10.1021/acs.analchem.7b01259)

Read more about Lipostar:

https://www.moldiscovery.com/software/lipostar/

## Download epilipidomics tools for Lipostar

Please find the latest .exe version in the release page.

## Instructions

+ ### LipidLynxX

+ Download the `.zip` package
+ unzip it into a folder
+ open Lipostar 2

+ ### LPPtiger

+ download the `.zip` package

+ unzip it into a folder

+ find the `LPPtiger.exe` to star the GUI of LPPtiger for Lipostar 2

![](./LPPtiger/img/LPPtiger_GUI.png)

+ load the `.csv` exported from Lipostrar2 for LPPtiger and set parameters on the GUI of LPPtiger and click on "Run analysis"

+ run status will be displayed on the GUI, wait until the run finish.

![](./LPPtiger/img/LPPtiger_run_finished.png)

+ the output `.csv` file can be imported back to Lipostar 2

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