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# StarCats | ||
epilipidomics plugins for Lipostar developed by Team SysMedOs | ||
## epilipidomics tools for Lipostar 2 developed by Team SysMedOs | ||
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This repository contains special version of epilipidomics tools which can be used with Lipostar 2 software. | ||
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+ ### LipidLynxX | ||
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![](./LipidLynxX/img/LipidLynxX_logo.png) | ||
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+ The LipidLynxX project is aimed to provide a unified identifier for major lipids, especially oxidized lipids in the epilipidome. | ||
+ Project repository: https://github.com/SysMedOs/LipidLynxX | ||
+ Publication: [Zhixu Ni, Maria Fedorova. "LipidLynxX: a data transfer hub to support integration of large scale lipidomics datasets"](https://www.sciencedirect.com/science/article/pii/S0891584919303466) | ||
+ DOI: [10.1016/j.freeradbiomed.2019.04.027](https://www.sciencedirect.com/science/article/pii/S0891584919303466) | ||
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+ ### LPPtiger | ||
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![](./LPPtiger/img/LPPtiger_logo.png) | ||
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+ LPPtiger is a pioneer in the field of high-throughput identification of oxidized lipids (epilipids). | ||
+ Project repository: https://github.com/SysMedOs/lpptiger | ||
+ Publication: [Ni, Zhixu, Georgia Angelidou, Ralf Hoffmann, and Maria Fedorova. "LPPtiger software for lipidome-specific prediction and identification of oxidized phospholipids from LC-MS datasets." Scientific Reports 7, Article number: 15138 (2017).](https://www.nature.com/articles/s41598-017-15363-z) | ||
+ DOI: [10.1038/s41598-017-15363-z](https://www.nature.com/articles/s41598-017-15363-z) | ||
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## About Lipostar 2 | ||
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Lipostar is the latest software from Molecular Discovery, developed to assist LC/MS-based lipidomics from the very beginning (direct import of raw data files) to the final goal (lipid identification, statistical analysis, report generation). | ||
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+ Publication: [Goracci L; Tortorella S; Tiberi P; Pellegrino RM; Di Veroli A; Valeri A; Cruciani G, Lipostar, a Comprehensive Platform-Neutral Cheminformatics Tool for Lipidomics. Anal. Chem., 2017, 89 (11), pp 6257–6264](https://pubs.acs.org/doi/10.1021/acs.analchem.7b01259) | ||
+ DOI: [10.1021/acs.analchem.7b01259](https://doi.org/10.1021/acs.analchem.7b01259) | ||
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Read more about Lipostar: | ||
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https://www.moldiscovery.com/software/lipostar/ | ||
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## Download epilipidomics tools for Lipostar | ||
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Please find the latest .exe version in the release page. | ||
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## Instructions | ||
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+ ### LipidLynxX | ||
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+ Download the `.zip` package | ||
+ unzip it into a folder | ||
+ open Lipostar 2 | ||
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+ ### LPPtiger | ||
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+ download the `.zip` package | ||
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+ unzip it into a folder | ||
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+ find the `LPPtiger.exe` to star the GUI of LPPtiger for Lipostar 2 | ||
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![](./LPPtiger/img/LPPtiger_GUI.png) | ||
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+ load the `.csv` exported from Lipostrar2 for LPPtiger and set parameters on the GUI of LPPtiger and click on "Run analysis" | ||
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+ run status will be displayed on the GUI, wait until the run finish. | ||
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![](./LPPtiger/img/LPPtiger_run_finished.png) | ||
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+ the output `.csv` file can be imported back to Lipostar 2 | ||
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