nf-encyclopedia v1.0.0

[1.0.0] - 2022-10-03

Changed

• Renamed params.ms_file_csv to params.input
• Updated EncyclopeDIA parameters to match GUI defaults.
• Retries should automatically occur when MSconvert hangs
• Renamed EncyclopeDIA processes to be more intuitive.
• The group column in the input file is now optional
• *_postfix parameters were renamed *_suffix.

Added

• Added full support for MSstats

Fixed

• Correctly use -a false when building a chromatogram library.
• MSstats now outputs into the results directory.