added test_data #26
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| name: CI | |
| permissions: | |
| actions: write | |
| checks: write | |
| contents: write | |
| deployments: write | |
| issues: write | |
| pull-requests: write | |
| statuses: write | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "v*" | |
| pull_request: {} | |
| workflow_dispatch: | |
| jobs: | |
| test_ubuntu: | |
| name: Test on Ubuntu | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Cancel Previous Runs | |
| uses: styfle/[email protected] | |
| with: | |
| access_token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Checkout Code | |
| uses: actions/checkout@v4 | |
| - name: Set up Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: "latest" | |
| python-version: "3.10.12" | |
| auto-update-conda: true | |
| use-mamba: true | |
| - name: Initialize Conda | |
| shell: bash -l {0} | |
| run: | | |
| conda init bash | |
| source ~/.bashrc | |
| conda create -n residem python=3.10 -y | |
| source ~/.bashrc | |
| - name: Force install dependencies | |
| continue-on-error: true | |
| run: | | |
| source ~/.bashrc | |
| conda activate residem | |
| full_path=$(which python) | |
| base_path=$(dirname $(dirname "$full_path")) | |
| echo $base_path | |
| conda env update --prefix $base_path --file environment.yml --prune | |
| conda install pytest pytest-cov -y | |
| - name: Install residem with Flit | |
| shell: bash -l {0} | |
| run: | | |
| source ~/.bashrc | |
| conda activate residem | |
| flit install --deps all --symlink | |
| - name: Test | |
| run: | | |
| source ~/.bashrc | |
| conda activate residem | |
| pytest --color=yes --cov=. --cov-report=xml --cov-report=term-missing --ignore=docs/ | |
| - name: Coverage | |
| uses: codecov/codecov-action@v4 | |
| test_macos: | |
| name: Test on macOS | |
| runs-on: macos-latest | |
| steps: | |
| - name: Cancel Previous Runs | |
| uses: styfle/[email protected] | |
| with: | |
| access_token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Checkout Code | |
| uses: actions/checkout@v4 | |
| - name: Set up Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: "latest" | |
| python-version: "3.10.12" | |
| auto-update-conda: true | |
| use-mamba: true | |
| - name: Initialize Conda | |
| shell: bash -l {0} | |
| run: | | |
| conda init bash | |
| source ~/.bash_profile | |
| conda create -n residem python=3.10 -y | |
| source ~/.bash_profile | |
| - name: Force install dependencies | |
| continue-on-error: true | |
| run: | | |
| source ~/.bash_profile | |
| conda activate residem | |
| full_path=$(which python) | |
| base_path=$(dirname $(dirname "$full_path")) | |
| echo $base_path | |
| conda env update --prefix $base_path --file environment.yml --prune | |
| conda install pytest pytest-cov -y | |
| - name: Install residem with Flit | |
| shell: bash -l {0} | |
| run: | | |
| source ~/.bash_profile | |
| conda activate residem | |
| flit install --deps all --symlink | |
| - name: Test | |
| run: | | |
| source ~/.bash_profile | |
| conda activate residem | |
| pytest --color=yes --cov=. --cov-report=xml --cov-report=term-missing --ignore=docs/ | |
| - name: Coverage | |
| uses: codecov/codecov-action@v4 | |
| deploy: | |
| name: Deploy | |
| needs: [test_ubuntu, test_macos] | |
| if: "success() && startsWith(github.ref, 'refs/tags/')" | |
| runs-on: ubuntu-latest | |
| outputs: | |
| deployment_status: ${{ steps.deployment_status.outcome }} | |
| steps: | |
| - name: Checkout Code | |
| uses: actions/checkout@v4 | |
| - name: Set up Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: "latest" | |
| python-version: "3.10.12" | |
| auto-update-conda: true | |
| use-mamba: true | |
| - name: Initialize Conda | |
| shell: bash -l {0} | |
| run: | | |
| conda init bash | |
| source ~/.bashrc | |
| - name: Install Flit | |
| run: | | |
| source ~/.bashrc | |
| conda activate residem | |
| pip install flit | |
| - name: Build and publish | |
| run: | | |
| source ~/.bashrc | |
| conda activate residem | |
| flit build | |
| flit publish | |
| env: | |
| FLIT_USERNAME: __token__ | |
| FLIT_PASSWORD: ${{ secrets.PYPI_API_KEY }} | |
| - name: Create GitHub Release | |
| id: deployment_status | |
| uses: softprops/action-gh-release@v2 | |
| with: | |
| generate_release_notes: true |