TileDB-Py 0.33.0

Release 0.33.0

• TileDB-Py 0.33.0 includes TileDB Embedded 2.27.0

What's Changed

• Fix stats_dump broken return value type by @kounelisagis in #2104
• Enable builds for Python 3.13 by @kounelisagis in #2107
• Implement serialization functionality for Config and VFS objects by @kounelisagis in #2110

Full Changelog: 0.32.5...0.33.0

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PyPI release: https://pypi.org/project/tiledb/0.33.0/

TileDB-Py 0.32.5

Release 0.32.5

• TileDB-Py 0.32.5 includes TileDB Embedded 2.26.2

Improvements

• Fix GroupMetadata backwards compatibility by @kounelisagis in #2102
• Fix typo in API doc for create_bucket by @nickvigilante in #2101
• Update enumerations exception message by @shaunrd0 in #2096
• Handle removal of 'StorageManager' from stats dumps in 2.27 - Part 2 by @kounelisagis #2098

Build system changes

• Revert "Do not run CI in PR twice (#2082)" by @kounelisagis in #2100

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PyPI release: https://pypi.org/project/tiledb/0.32.5/

TileDB-Py 0.32.4

Release 0.32.4

TileDB-Py 0.32.4 was inadvertently released against TileDB 2.26.1. This will be corrected in 0.32.5, but the version delta does not justify yanking 0.32.4.

Improvements

• Add TILEDB_DATETIME_DAY type support for Arrow by @kounelisagis in #2002
• Extend the GroupMetadata functionality to support NumPy arrays by @kounelisagis in #2085
• Add extra argument to Group::add_member by @kounelisagis in #2093
• Handle removal of 'StorageManager' from stats dumps in 2.27 by @kounelisagis in #2088
• Make default value for vfs.s3.region in test conditional by @kounelisagis in #2086
• Make error message for non-existing Enumeration in test conditional by @kounelisagis in #2087
• Fix randomly failing test DenseArrayTest::test_open_with_timestamp[False] by @kounelisagis in #2090
• Fix skipif condition for test_cloud by @kounelisagis in #2084
• Raise error when sparse=True is passed to tiledb.from_numpy by @kounelisagis in #2080
• Documentation and CI updates by @kounelisagis in #2078
• Move DenseArrayImpl to pure Python by @kounelisagis and @nguyenv in #2071
• Move PackedBuffer and pack_metadata_val to pure Python, and wrap tiledb_datatype_size with pybind by @kounelisagis in #2072
• Move SparseArrayImpl to pure Python by @kounelisagis in #2065

Build system changes

• Add CI to test against the TileDB core library built from source with a custom version by @dudoslav and @kounelisagis in #2091
• Do not run CI in PR twice by @dudoslav in #2082
• Disable release for Python 3.8 by @dudoslav in #2081
• Re-enable automatic upload to pypi by @dudoslav and @kounelisagis in #2034
• Drop Python 3.8 support by @kounelisagis in #2079

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PyPI release: https://pypi.org/project/tiledb/0.32.4/

TileDB-Py 0.32.3

Release 0.32.3

• TileDB-Py 0.32.3 includes TileDB Embedded 2.26.2

Build system changes

• Override tag version in manylinux container by @dudoslav in #2077

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PyPI release: https://pypi.org/project/tiledb/0.32.3/

TileDB-Py 0.32.2

Release 0.32.2

Improvements

• Fix object_type return value by @kounelisagis in #2073

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PyPI release: https://pypi.org/project/tiledb/0.32.2/

TileDB-Py 0.32.1

Release 0.32.1

• TileDB-Py 0.32.1 includes TileDB Embedded 2.26.1

Improvements

• Move vacuum to pure Python by @kounelisagis in #2067
• Make dump calls conditional by @kounelisagis in #2062

Build system changes

• Bump libtiledb version to 2.26.0 for daily tests by @kounelisagis in #2063

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PyPI release: https://pypi.org/project/tiledb/0.32.1/

TileDB-Py 0.32.0

Release 0.32.0

• TileDB-Py 0.32.0 includes TileDB Embedded 2.26.0

Improvements

• Replace dump() calls with operator<< by @kounelisagis in #1975
• Convert config values to strings in VFS init by @gspowley and @kounelisagis in #2060
• Move DomainIndexer, Stats, and Array helper functions from Cython to pybind by @kounelisagis in #2057
• Refactor Aggregation from Cython to Pure Python by @kounelisagis in #2056
• Move tiledb_object_* API calls from Cython to pybind by @kounelisagis in #2049
• Don't check dtype if column_types is not set - from_pandas by @kounelisagis in #2055
• Fix serialization test and add command line option by @kounelisagis in #2052
• Remove deprecations by @kounelisagis in #2050
• Make from_pandas respect column_types for index dimensions by @kounelisagis in #2046
• Remove Dask test skips and add Dask as a test dependency by @kounelisagis in #2047
• Fix exception when calling label_index on a Query object by @sric0880 and @kounelisagis in #2044
• Improve Query Condition error messages to align with TileDB-SOMA-Py by @kounelisagis in #2041
• Fix numpy.ma.fix_invalid issue in NumPy 2.1.0 by replacing with numpy.ma.masked_invalid by @kounelisagis in #2042
• Add scope_ctx to doc build by @spencerseale in #2038
• Passing Empty List to multirange_index and df should return Empty Results by @nguyenv and @kounelisagis in #1412
• Get rid all BNF lines in QueryCondition docstring by @kounelisagis in #2028
• Add tiledb_current_domain_t as type by @kounelisagis in #2033
• Add Enumeration in api ref docs by @kounelisagis in #2026
• Hide sensitive params shown in Config::repr by @kounelisagis in #2029
• Wrap current domain API by @kounelisagis in #2015

Build system changes

• Bump libtiledb and numpy versions for daily tests / make CurrentDomain and NDRectangle code conditional by @kounelisagis in #2036
• Fix compilation warnings by @kounelisagis in #1940
• Add packaging as dependency by @dudoslav in #2032
• Expose setup.py flag to enable deprecations by @kounelisagis in #2025
• Update Cython minimum version to 3 by @kounelisagis in #2027

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PyPI release: https://pypi.org/project/tiledb/0.32.0/

TileDB-Py 0.31.1

Release 0.31.1

Improvements

• Fix malformed doc str for tiledb.array_schema.ArraySchema by @kounelisagis in #2007
• Fix deprecation and test by @kounelisagis in #2021

Build system changes

• Add pandas dependency to test group by @dudoslav and @kounelisagis in #2022
• Define TILEDB_REMOVE_DEPRECATIONS macro for cc and remove deprecated code by @kounelisagis and @dudoslav in #2023

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PyPI release: https://pypi.org/project/tiledb/0.31.1/

TileDB-Py 0.31.0

Release 0.31.0

• TileDB-Py 0.31.0 includes TileDB Embedded 2.25.0

Improvements

• Remove deprecated Array.delete_fragments code path by @teo-tsirpanis and @kounelisagis in #2009
• Fix a typo in an error message by @johnkerl in #2004
• Support ctx argument in array_exists by @kounelisagis in #2003
• Move fragment list consolidation API to pybind by @kounelisagis in #1999

Build system changes

• Add version pins for pandas 3.0 by @kounelisagis #2016
• Scikit-build-core build system rework by @dudoslav and @ihnorton in #1988
• Patches for the build system by @dudoslav, @ihnorton and @kounelisagis in #2010, #2011, #2013, #2014, #2018, #2019, #2020

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PyPI release: https://pypi.org/project/tiledb/0.31.0/

TileDB-Py 0.30.2

Release 0.30.2

• TileDB-Py 0.30.2 includes TileDB Embedded 2.24.4

Packaging Notes

While we currently plan to maintain support for CentOS 7-compatible systems (GLIBC 2.17) through TileDB 2.31, ecosystem and infrastructure updates following the CentOS 7 end-of-life on 30/Jun/2024 may necessitate dropping support earlier. Please contact us if you still use a CentOS 7 (GLIBC 2.17)-like Linux distribution.

Improvements

• Fix OverflowError: Python int too large to convert to C long by @kounelisagis in #2000
• Wrap as_built function by @kounelisagis in #1994
• Fix array.query() incorrectly handling nullables by @kounelisagis in #1998
• Add offending column when from_pandas -> _get_column_infos fails by @kounelisagis in #1997

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PyPI release: https://pypi.org/project/tiledb/0.30.2/