Merge pull request #7 from TileDB-Inc/rw/nbs

update "template" nb names: `workshop.ipynb` -> `instructor_scverse-ml-workshop-2024`

.github/workflows/cp-template.yml

@@ -1,4 +1,4 @@
-name: Sync template.ipynb to scverse-ml-workshop-2024 TileDB-Cloud namespace
+name: Sync workshop.ipynb to scverse-ml-workshop-2024 TileDB-Cloud namespace
 on:
   push:
     branches:
@@ -13,6 +13,6 @@ jobs:
       with:
         python-version: '3.11'
     - run: pip install -e .
-    - run: scverse nb put template.ipynb
+    - run: scverse nb put workshop.ipynb
       env:
         TILEDB_REST_TOKEN: ${{ secrets.TILEDB_REST_TOKEN }}

README.md

@@ -2,6 +2,8 @@
 
 Scripts/Notebooks associated with the [Training models on atlas-scale single-cell datasets] workshop at [scverse Conference 2024].
 
+[workshop.ipynb] is synced to the TileDB-Cloud, and a copy created for each workshop participant.
+
 ## `scverse`: TileDB-Cloud CLI
 
 ### Install
@@ -207,7 +209,8 @@ Options:
   -n, --dry-run                 Print commands that would be run, but don't
                                 run them
   -s, --src-notebook-name TEXT  "Read-only" notebook name, to be copied and
-                                renamed for each user (default: "template").
+                                renamed for each user (default:
+                                "instructor_scverse-ml-workshop-2024").
   --help                        Show this message and exit.
 ```
 </details>
@@ -384,7 +387,8 @@ scverse user add
 #                                   ['owner', 'admin', 'read_write',
 #                                   'read_only']; default: "read_write")
 #   -s, --src-notebook-name TEXT    "Read-only" notebook name, to be copied and
-#                                   renamed for each user (default: "template").
+#                                   renamed for each user (default:
+#                                   "instructor_scverse-ml-workshop-2024").
 #   -i, --image TEXT                Default image
 #   -r, --region TEXT               Default region
 #   -z, --size TEXT                 Default server size
@@ -399,8 +403,8 @@ See [examples/](examples/):
 
 
 [Training models on atlas-scale single-cell datasets]: https://cfp.scverse.org/2024/talk/GQHNYE/
-[schedule]: https://scverse.org/conference2024/schedule#2024-09-12
 [scverse Conference 2024]: https://scverse.org/conference2024
+[workshop.ipynb]: workshop.ipynb
 [pytorch.ipynb]: examples/pytorch.ipynb
 [pytorch.html]: https://chanzuckerberg.github.io/cellxgene-census/notebooks/experimental/pytorch.html
 [cshl.ipynb]: examples/cshl.ipynb

scverse/cli/base.py

@@ -17,7 +17,7 @@ def cli():
 DEFAULT_CREDENTIAL_NAME = 'scverse-ml-workshop-2024'
 DEFAULT_CLOUD_TOKEN_PATH = '.tiledb-cloud-token'
 TILEDB_REST_TOKEN_VAR = 'TILEDB_REST_TOKEN'
-TEMPLATE_NAME = 'template'  # "Read-only" notebook, to be copied and renamed for each user.
+TEMPLATE_NAME = 'instructor_scverse-ml-workshop-2024'  # "Read-only" notebook, to be copied and renamed for each user.
 DEFAULT_SERVER_SIZE = 'large'  # TODO
 
 READ_WRITE = OrganizationRoles.READ_WRITE